Pigmentiphaga sp. NML080357

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Pigmentiphaga

Description

Pigmentiphaga sp. NML080357 is a Gram-negative bacterium characterized by its rod shape. This organism possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability. The strain is cataloged under the accession number NINW00000000.1, which provides a reference point for genomic and taxonomic studies. The classification of Pigmentiphaga sp. suggests that it may be involved in specific ecological roles, particularly in environments where pigment degradation is relevant. Although specific metabolic pathways or ecological interactions for Pigmentiphaga sp. NML080357 are not detailed, the traits of Gram-negative bacteria and rod-shaped morphology typically suggest a versatile nature, often allowing for survival in diverse habitats. This versatility might enable Pigmentiphaga sp. to exploit various substrates, potentially including pigments from organic materials in its environment. In summary, with its Gram-negative status and rod shape, Pigmentiphaga sp. NML080357 may play a significant role in biogeochemical cycles, especially in contexts related to pigment degradation or transformation. Understanding such traits can provide insights into the ecological functions of this bacterium and its potential applications in bioremediation or other environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusPigmentiphaga
SpeciesPigmentiphaga sp. NML080357
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pigmentiphaga sp. NML080357 NML080357_S20_L001_001_24, whole

Gene Summary

Adenine Count

952308 bp

Thymine Count

954827 bp

Guanine Count

1915628 bp

Cytosine Count

1912097 bp

Genome Length

5734860 bp

Protein-coding Genes

5264 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
raqprd family plasmidCDO44_05275Not AvailableNegative1064302 - 106468513920.6
integrating conjugative element membrane proteinCDO44_05280Not AvailableNegative1064784 - 106553327883.4
conjugative coupling factor trad, pfgi-1 classCDO44_05285Not AvailableNegative1065530 - 106771980942.2
integrating conjugative element proteinCDO44_05290Not AvailableNegative1067724 - 106826318969.3
lytic transglycosylaseCDO44_05295Not AvailableNegative1068260 - 106885021287.5
integrating conjugative element proteinCDO44_05300Not AvailableNegative1068832 - 106955726964.0
hypothetical proteinCDO44_05305Not AvailableNegative1069572 - 107021622907.4
integrating conjugative element protein pill, pfgi-1CDO44_05310Not AvailableNegative1070213 - 107077919938.0
transcriptional regulatorCDO44_05315Not AvailablePositive1070930 - 107126812297.0
protein-tyrosine-phosphataseCDO44_05320Not AvailablePositive1071271 - 107176518144.7

Displaying genes 1091 – 1100 of 5387 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.