Calothrix sp. NIES-3974

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Nostocales

Family

Calotrichaceae

Genus

Calothrix

Description

Calothrix sp. NIES-3974 is a cyanobacterial strain characterized by a single replicon, which highlights its genetic organization. The strain is cataloged under the accession number NZ_AP018254.1, facilitating its identification and further research within genetic and ecological studies. Cyanobacteria, including Calothrix species, are known for their role in nitrogen fixation and primary production in various aquatic environments. This capability suggests that Calothrix sp. NIES-3974 may contribute to nutrient cycling and the overall productivity of its ecosystem. The presence of only one replicon indicates a streamlined genetic structure, which may be advantageous for adaptation and survival in specific habitats. Understanding the genetic makeup and ecological function of Calothrix sp. NIES-3974 can provide insights into its interactions within microbial communities, especially in nutrient-limited environments where cyanobacteria often thrive. Additionally, the study of this strain can enhance our knowledge of the evolutionary adaptations of cyanobacteria, particularly in relation to their metabolic functions and environmental resilience. Overall, Calothrix sp. NIES-3974 exemplifies the significant ecological roles that cyanobacteria play in aquatic ecosystems, particularly in processes such as nitrogen fixation and primary productivity.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyCalotrichaceae
GenusCalothrix
SpeciesCalothrix sp. NIES-3974
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Calothrix sp. NIES-3974
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Calothrix sp. NIES-3974 chromosome, complete genome.

Gene Summary

Adenine Count

1752542 bp

Thymine Count

1747626 bp

Guanine Count

1244003 bp

Cytosine Count

1241704 bp

Genome Length

5985875 bp

Protein-coding Genes

4760 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pentapeptide repeat-containing proteinCDC37_RS23040Not AvailablePositive5790774 - 579136720709.6
abc transporter permeaseCDC37_RS23045Not AvailablePositive5791719 - 579248627749.0
phage holin family proteinCDC37_RS23050Not AvailablePositive5792502 - 579287012911.5
cobalamin biosynthesis proteinCDC37_RS23060Not AvailableNegative5793171 - 579372520044.0
tetratricopeptide repeat proteinCDC37_RS23065Not AvailablePositive5794279 - 579612069701.9
crispr-associated protein csx3CDC37_RS23070Not AvailablePositive5796649 - 579763836689.0
putative crispr-associated proteinCDC37_RS23075Not AvailablePositive5797870 - 579894641102.2
type iii-b crispr-associated protein cas10/cmr2CDC37_RS25625Not AvailablePositive5798989 - 57992379549.76
hypothetical proteinCDC37_RS23085Not AvailablePositive5799412 - 579975011859.9
hypothetical proteinCDC37_RS23090Not AvailableNegative5799733 - 57999999942.06

Displaying genes 4661 – 4670 of 4809 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

126 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 126 metabolites

Health Effects

No health effects information available for this bacterium.