Pelagibacteraceae bacterium TMED13

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Description

Pelagibacteraceae bacterium TMED13 is a member of the Pelagibacteraceae family, known for its marine ecological significance. This bacterium has been characterized by having a single replicon, which is indicative of its streamlined genomic structure. The genomic information for TMED13 is stored under the accession number NHBS00000000.1, providing a reference point for researchers interested in studying its genetic makeup and functionalities. Pelagibacteraceae, as a family, is recognized for its role in marine environments, particularly in nutrient cycling and organic matter degradation. Members of this family are often found in oceanic waters, where they contribute to the microbial community dynamics and play a crucial role in carbon cycling. The unique genomic features of such bacteria, including their minimalistic lifestyle and efficient metabolic pathways, enable them to thrive in oligotrophic conditions typical of many marine habitats. The ecological insight provided by the study of Pelagibacteraceae bacterium TMED13 underscores the importance of such microorganisms in maintaining the health and stability of marine ecosystems. By participating in the breakdown of organic materials and cycling of nutrients, TMED13 and its relatives may influence primary productivity and the overall functioning of marine food webs. This highlights the critical role of small, often overlooked microorganisms in sustaining marine biodiversity and ecological processes.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pelagibacteraceae bacterium TMED13 70074, whole genome

Gene Summary

Adenine Count

472346 bp

Thymine Count

461330 bp

Guanine Count

202419 bp

Cytosine Count

194859 bp

Genome Length

1347538 bp

Protein-coding Genes

1356 genes

Non-Coding Genes

31 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydratase large subunitCBB73_06895Not AvailableNegative1250160 - 125156051331.9
50s ribosomal protein l19CBB73_06900Not AvailableNegative1251582 - 125207317262.4
trna (guanosine(37)-n1)-methyltransferase trmdCBB73_06905Not AvailableNegative1252070 - 125277724463.8
16s rrna processing protein rimmCBB73_06910Not AvailableNegative1252767 - 125327319320.8
hypothetical proteinCBB73_06915Not AvailablePositive1253587 - 125392113132.0
hypothetical proteinCBB73_06920Not AvailableNegative1253922 - 125434716225.7
hypothetical proteinCBB73_06925Not AvailableNegative1254385 - 125466010567.8
flagellar biosynthesis anti-sigma factor flgmCBB73_06930Not AvailableNegative1254671 - 125498211191.4
flagella basal body p-ring formation protein flgaCBB73_06935Not AvailableNegative1254995 - 125571427718.2
hypothetical proteinCBB73_06940Not AvailableNegative1255718 - 125614916417.1

Displaying genes 1271 – 1280 of 1387 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.