Allomuricauda sp. TMED12

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Allomuricauda

Description

Allomuricauda sp. TMED12 is characterized by having a single replicon, indicating a streamlined genomic structure. This trait may confer advantages in replication efficiency and stability within its ecological niche. The organism is cataloged under the accession number NHBR00000000.2, which provides a reference for genomic data associated with this specific strain. The single replicon structure suggests that Allomuricauda sp. TMED12 might possess a relatively simple genomic organization compared to other microorganisms that have multiple replicons. This simplicity can be advantageous in specific environments where rapid adaptation and growth are necessary, potentially allowing it to thrive in fluctuating conditions. Understanding the genomic traits of Allomuricauda sp. TMED12 is crucial for elucidating its role in its ecosystem. The streamlined genome may facilitate metabolic efficiency, enabling the organism to exploit available resources effectively. This trait could be particularly relevant in environments where resource availability fluctuates, such as marine ecosystems. In conclusion, the genomic simplicity exemplified by the single replicon of Allomuricauda sp. TMED12 could provide insights into its ecological adaptability and efficiency, highlighting its potential roles in nutrient cycling and ecosystem dynamics. Further research into this organism may uncover additional functional traits and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusAllomuricauda
SpeciesAllomuricauda sp. TMED12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Allomuricauda sp. TMED12 77908, whole genome shotgun

Gene Summary

Adenine Count

1278190 bp

Thymine Count

1272427 bp

Guanine Count

887003 bp

Cytosine Count

898321 bp

Genome Length

4336285 bp

Protein-coding Genes

3777 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4,5-dopa dioxygenase extradiolCBB72_000180Not AvailableNegative45601 - 4642830966.1
polyisoprenoid-binding proteinCBB72_000185Not AvailableNegative46543 - 4707319485.7
arac family transcriptional regulatorCBB72_000190Not AvailableNegative47172 - 4799932440.8
alpha-l-fucosidaseCBB72_000195Not AvailableNegative48128 - 4942949939.9
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtabCBB72_000200Not AvailablePositive49646 - 5097450079.5
n-acetyltransferaseCBB72_000205Not AvailableNegative51027 - 5132011353.8
alpha/beta hydrolaseCBB72_000210Not AvailablePositive51486 - 5214825484.3
lytic transglycosylase domain-containing proteinCBB72_000215Not AvailablePositive52198 - 5316637044.0
hypothetical proteinCBB72_000220Not AvailablePositive53534 - 5524063699.9
hypothetical proteinCBB72_000230Not AvailableNegative55630 - 5625023096.2

Displaying genes 161 – 170 of 3919 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.