SAR116 cluster bacterium MED-G04

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Puniceispirillales

Family

Genus

Description

The SAR116 cluster bacterium MED-G04 is characterized by having a single replicon, indicating a streamlined genomic structure typical of many marine microorganisms. This bacterium falls within the SAR116 clade, a group known for its significant presence in oceanic environments, particularly in coastal and open ocean waters. The genome of MED-G04 is recorded under the accession number NTKX00000000.1, which provides a reference for further studies and analyses. The SAR116 cluster is notable for its ecological role in marine ecosystems, particularly in the cycling of organic matter and nutrients. Members of this cluster have been shown to engage in the degradation of dissolved organic matter, contributing to the overall productivity and health of marine environments. The presence of SAR116 bacteria, including MED-G04, in various marine habitats underscores their importance in biogeochemical processes. Their adaptations allow them to thrive in nutrient-poor waters, where they play a crucial role in maintaining ecosystem balance. Understanding the traits and functions of such organisms is vital for grasping the complexities of marine microbiomes and their contributions to ocean health.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: SAR116 cluster bacterium MED-G04 SAR116-clade-MED-G04-C65,

Gene Summary

Adenine Count

329232 bp

Thymine Count

333956 bp

Guanine Count

448702 bp

Cytosine Count

446594 bp

Genome Length

1558484 bp

Protein-coding Genes

1528 genes

Non-Coding Genes

30 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
branched-chain amino acid abc transporter substrate-binding proteinCNE91_00890Not AvailablePositive176747 - 17792839666.9
abc transporter atp-binding proteinCNE91_00895Not AvailablePositive177987 - 17876628369.5
abc transporter atp-binding proteinCNE91_00900Not AvailablePositive178763 - 17946725210.9
branched-chain amino acid abc transporter permeaseCNE91_00905Not AvailablePositive179471 - 18007521928.2
rna chaperone hfqCNE91_00910Not AvailableNegative180172 - 1804269636.69
d-amino acid aminotransferaseCNE91_00915Not AvailableNegative180515 - 18137231474.1
trk system potassium transporter trkaCNE91_00920Not AvailableNegative181394 - 18277049426.7
sigma-54-dependent fis family transcriptional regulatorCNE91_00925Not AvailableNegative182783 - 18415950692.6
pas domain-containing sensor histidine kinaseCNE91_00930Not AvailableNegative184156 - 18639382462.1
nitrogen regulation protein nr(i)CNE91_00935Not AvailableNegative186431 - 18789453785.0

Displaying genes 181 – 190 of 1558 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.