Pelagibaca sp.

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Pelagibaca

Description

Pelagibaca sp. is a marine bacterium characterized by having a single replicon, which is indicative of its genetic organization. The genomic data for this organism is publicly accessible under the accession number NYZS00000000.1. As a member of the marine microbial community, Pelagibaca sp. plays a role in various ecological processes, including nutrient cycling in oceanic environments. The single replicon structure suggests a streamlined genomic architecture that may contribute to its adaptability and efficiency in utilizing available resources in marine ecosystems. This bacterium's specific ecological niche and interactions with other marine organisms remain to be fully elucidated; however, its presence highlights the diversity of microbial life in ocean habitats and the potential functional roles such organisms may fulfill within their ecosystems. Understanding Pelagibaca sp. and its ecological significance can provide insights into marine microbiomes and their contributions to ocean health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPelagibaca
SpeciesPelagibaca sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pelagibaca sp. isolate ARS5 MHASMcontig_462408, whole genome

Gene Summary

Adenine Count

1019353 bp

Thymine Count

1024340 bp

Guanine Count

1772377 bp

Cytosine Count

1778886 bp

Genome Length

5608188 bp

Protein-coding Genes

5035 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2390 domain-containing proteinCMI67_08675Not AvailableNegative1803608 - 180405717037.3
type ii crispr rna-guided endonuclease cas9CMI67_08680Not AvailablePositive1804288 - 1807491122076.0
subtype ii crispr-associated endonuclease cas1CMI67_08685Not AvailablePositive1807495 - 180835532167.8
crispr-associated endonuclease cas2CMI67_08690Not AvailablePositive1808405 - 180873713236.3
hypothetical proteinCMI67_08695Not AvailablePositive1810537 - 181124726808.9
hypothetical proteinCMI67_08700Not AvailableNegative1811996 - 181253918513.0
hypothetical proteinCMI67_08705Not AvailableNegative1812545 - 181416459974.3
hypothetical proteinCMI67_08710Not AvailablePositive1814370 - 18145978009.53
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit aCMI67_08715Not AvailablePositive1814594 - 181598849081.4
abc transporter permeaseCMI67_08720Not AvailablePositive1815985 - 181692933614.2

Displaying genes 1721 – 1730 of 5096 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.