Petrimonas sp. IBARAKI

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Dysgonomonadaceae

Genus

Petrimonas

Description

Petrimonas sp. IBARAKI is a Gram-negative bacterium characterized by its rod-shaped morphology. This microorganism possesses a single replicon, indicating a streamlined genetic structure conducive to its adaptability and survival in various environments. Its genetic information can be accessed through the accession number AP018040.2, which provides a reference for further genomic studies. The classification of Petrimonas sp. within the broader microbial community highlights its potential ecological role. As a Gram-negative bacterium, it may possess a complex outer membrane that could influence its interactions with other organisms and the environment. Gram-negative bacteria are often involved in nutrient cycling and can play significant roles in biogeochemical processes, such as the decomposition of organic matter and the transformation of nutrients. Understanding the characteristics of Petrimonas sp. IBARAKI can provide insights into its ecological niche and potential applications in biotechnology or environmental management. Its single replicon may suggest efficiency in replication and resource utilization, which could be advantageous in competitive environments. The study of this bacterium could contribute to a deeper understanding of microbial diversity and the functional roles of bacteria in their respective ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyDysgonomonadaceae
GenusPetrimonas
SpeciesPetrimonas sp. IBARAKI
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Petrimonas sp. IBARAKI DNA, complete genome.

Gene Summary

Adenine Count

1032698 bp

Thymine Count

1036227 bp

Guanine Count

812372 bp

Cytosine Count

811936 bp

Genome Length

3693233 bp

Protein-coding Genes

2992 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cupinPEIBARAKI_4080Not AvailablePositive115779 - 11612913032.9
membrane proteinPEIBARAKI_4081Not AvailablePositive116157 - 1164088581.95
Trna-lysNot AvailableNot AvailablePositive116732 - 116804Not Available
integration host factor, alpha subunitPEIBARAKI_4082Not AvailableNegative116907 - 1171739112.24
hypothetical proteinPEIBARAKI_4083Not AvailablePositive117380 - 11814128432.1
hypothetical proteinPEIBARAKI_4084Not AvailablePositive118125 - 11901233692.5
hypothetical proteinPEIBARAKI_4085Not AvailablePositive118996 - 12012042723.4
6-carboxy-5,6,7,8-tetrahydropterin synthasePEIBARAKI_4086Not AvailablePositive120203 - 12056513860.4
7-carboxy-7-deazaguanine synthasePEIBARAKI_4087Not AvailablePositive120690 - 12113016764.4
ribonuclease zPEIBARAKI_4088Not AvailablePositive121156 - 12207034852.8

Displaying genes 81 – 90 of 3047 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.