Petrimonas sp. IBARAKI

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Dysgonomonadaceae

Genus

Petrimonas

Description

Petrimonas sp. IBARAKI is a Gram-negative bacterium characterized by its rod-shaped morphology. This microorganism possesses a single replicon, indicating a streamlined genetic structure conducive to its adaptability and survival in various environments. Its genetic information can be accessed through the accession number AP018040.2, which provides a reference for further genomic studies. The classification of Petrimonas sp. within the broader microbial community highlights its potential ecological role. As a Gram-negative bacterium, it may possess a complex outer membrane that could influence its interactions with other organisms and the environment. Gram-negative bacteria are often involved in nutrient cycling and can play significant roles in biogeochemical processes, such as the decomposition of organic matter and the transformation of nutrients. Understanding the characteristics of Petrimonas sp. IBARAKI can provide insights into its ecological niche and potential applications in biotechnology or environmental management. Its single replicon may suggest efficiency in replication and resource utilization, which could be advantageous in competitive environments. The study of this bacterium could contribute to a deeper understanding of microbial diversity and the functional roles of bacteria in their respective ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyDysgonomonadaceae
GenusPetrimonas
SpeciesPetrimonas sp. IBARAKI
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Petrimonas sp. IBARAKI DNA, complete genome.

Gene Summary

Adenine Count

1032698 bp

Thymine Count

1036227 bp

Guanine Count

812372 bp

Cytosine Count

811936 bp

Genome Length

3693233 bp

Protein-coding Genes

2992 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yrbi family 3-deoxy-d-manno-octulosonate 8-phosphate phosphatasePEIBARAKI_4779Not AvailablePositive963479 - 96400019374.3
2-oxoglutarate oxidoreductase, alpha subunitPEIBARAKI_4780Not AvailablePositive964537 - 96561939552.9
2-oxoglutarate oxidoreductase subunit betaPEIBARAKI_4781Not AvailablePositive965800 - 96656127138.0
2-oxoglutarate oxidoreductase, gamma subunitPEIBARAKI_4782Not AvailablePositive966572 - 96713220724.6
dead/deah box helicase domain-containingproteinPEIBARAKI_4783Not AvailableNegative967149 - 96845649192.3
Trna-serNot AvailableNot AvailablePositive968604 - 968688Not Available
site-specific recombinase xerdPEIBARAKI_4784Not AvailablePositive968963 - 97009043057.7
carbamoyl-phosphate synthase large chain/diaminopimelate epimerasePEIBARAKI_4785Not AvailableNegative970038 - 9702809710.65
atpasePEIBARAKI_4786Not AvailableNegative970282 - 97155949206.6
integrasePEIBARAKI_4787Not AvailableNegative971556 - 97201417639.1

Displaying genes 791 – 800 of 3047 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.