Petrimonas sp. IBARAKI

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Dysgonomonadaceae

Genus

Petrimonas

Description

Petrimonas sp. IBARAKI is a Gram-negative bacterium characterized by its rod-shaped morphology. This microorganism possesses a single replicon, indicating a streamlined genetic structure conducive to its adaptability and survival in various environments. Its genetic information can be accessed through the accession number AP018040.2, which provides a reference for further genomic studies. The classification of Petrimonas sp. within the broader microbial community highlights its potential ecological role. As a Gram-negative bacterium, it may possess a complex outer membrane that could influence its interactions with other organisms and the environment. Gram-negative bacteria are often involved in nutrient cycling and can play significant roles in biogeochemical processes, such as the decomposition of organic matter and the transformation of nutrients. Understanding the characteristics of Petrimonas sp. IBARAKI can provide insights into its ecological niche and potential applications in biotechnology or environmental management. Its single replicon may suggest efficiency in replication and resource utilization, which could be advantageous in competitive environments. The study of this bacterium could contribute to a deeper understanding of microbial diversity and the functional roles of bacteria in their respective ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyDysgonomonadaceae
GenusPetrimonas
SpeciesPetrimonas sp. IBARAKI
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Petrimonas sp. IBARAKI DNA, complete genome.

Gene Summary

Adenine Count

1032698 bp

Thymine Count

1036227 bp

Guanine Count

812372 bp

Cytosine Count

811936 bp

Genome Length

3693233 bp

Protein-coding Genes

2992 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methylaspartate mutase, s subunitPEIBARAKI_4285Not AvailablePositive369398 - 36980814563.6
dna mismatch repair protein mutlPEIBARAKI_4286Not AvailablePositive369873 - 37127650541.1
methylaspartate mutase, e subunitPEIBARAKI_4287Not AvailablePositive371260 - 37271153169.7
methylaspartate ammonia-lyasePEIBARAKI_4288Not AvailablePositive372739 - 37395644602.8
lipoproteinPEIBARAKI_4289Not AvailablePositive373987 - 37534549650.8
pf14330 domain proteinPEIBARAKI_4290Not AvailablePositive375437 - 37575411841.5
hypothetical proteinPEIBARAKI_4291Not AvailablePositive375751 - 37671036927.0
fumarate hydratase, alpha subunitPEIBARAKI_4292Not AvailablePositive376712 - 37755729742.0
fumarate hydratase i, c-terminal domain, betasubunitPEIBARAKI_4293Not AvailablePositive377581 - 37813820002.4
alanine racemasePEIBARAKI_4294Not AvailablePositive378212 - 37894327746.6

Displaying genes 291 – 300 of 3047 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.