Petrimonas sp. IBARAKI

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Dysgonomonadaceae

Genus

Petrimonas

Description

Petrimonas sp. IBARAKI is a Gram-negative bacterium characterized by its rod-shaped morphology. This microorganism possesses a single replicon, indicating a streamlined genetic structure conducive to its adaptability and survival in various environments. Its genetic information can be accessed through the accession number AP018040.2, which provides a reference for further genomic studies. The classification of Petrimonas sp. within the broader microbial community highlights its potential ecological role. As a Gram-negative bacterium, it may possess a complex outer membrane that could influence its interactions with other organisms and the environment. Gram-negative bacteria are often involved in nutrient cycling and can play significant roles in biogeochemical processes, such as the decomposition of organic matter and the transformation of nutrients. Understanding the characteristics of Petrimonas sp. IBARAKI can provide insights into its ecological niche and potential applications in biotechnology or environmental management. Its single replicon may suggest efficiency in replication and resource utilization, which could be advantageous in competitive environments. The study of this bacterium could contribute to a deeper understanding of microbial diversity and the functional roles of bacteria in their respective ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyDysgonomonadaceae
GenusPetrimonas
SpeciesPetrimonas sp. IBARAKI
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Petrimonas sp. IBARAKI DNA, complete genome.

Gene Summary

Adenine Count

1032698 bp

Thymine Count

1036227 bp

Guanine Count

812372 bp

Cytosine Count

811936 bp

Genome Length

3693233 bp

Protein-coding Genes

2992 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
starch-binding protein, susd-like familyPEIBARAKI_6106Not AvailablePositive2558055 - 255950054486.2
hypothetical proteinPEIBARAKI_6107Not AvailablePositive2559610 - 2562291100981.0
arylsulfatase a family protein (precursor)PEIBARAKI_6108Not AvailableNegative2562317 - 256375655424.8
glycoside hydrolase family 2 sugar binding protein (precursor)PEIBARAKI_6109Not AvailableNegative2563786 - 2566701111113.0
l-fucose isomerase-like proteinPEIBARAKI_6110Not AvailableNegative2566737 - 256820354091.5
transporter, major facilitator family proteinPEIBARAKI_6111Not AvailableNegative2568215 - 256946845798.8
transcriptional regulator, gntr familyPEIBARAKI_6112Not AvailablePositive2569567 - 257032228985.1
tonb-dependent receptorPEIBARAKI_6113Not AvailablePositive2570569 - 2573703117107.0
susd/ragb family lipoproteinPEIBARAKI_6114Not AvailablePositive2573716 - 257521256312.5
alpha-l-rhamnosidasePEIBARAKI_6115Not AvailablePositive2575429 - 257765785726.3

Displaying genes 2141 – 2150 of 3047 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.