Petrimonas sp. IBARAKI

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Dysgonomonadaceae

Genus

Petrimonas

Description

Petrimonas sp. IBARAKI is a Gram-negative bacterium characterized by its rod-shaped morphology. This microorganism possesses a single replicon, indicating a streamlined genetic structure conducive to its adaptability and survival in various environments. Its genetic information can be accessed through the accession number AP018040.2, which provides a reference for further genomic studies. The classification of Petrimonas sp. within the broader microbial community highlights its potential ecological role. As a Gram-negative bacterium, it may possess a complex outer membrane that could influence its interactions with other organisms and the environment. Gram-negative bacteria are often involved in nutrient cycling and can play significant roles in biogeochemical processes, such as the decomposition of organic matter and the transformation of nutrients. Understanding the characteristics of Petrimonas sp. IBARAKI can provide insights into its ecological niche and potential applications in biotechnology or environmental management. Its single replicon may suggest efficiency in replication and resource utilization, which could be advantageous in competitive environments. The study of this bacterium could contribute to a deeper understanding of microbial diversity and the functional roles of bacteria in their respective ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyDysgonomonadaceae
GenusPetrimonas
SpeciesPetrimonas sp. IBARAKI
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Petrimonas sp. IBARAKI DNA, complete genome.

Gene Summary

Adenine Count

1032698 bp

Thymine Count

1036227 bp

Guanine Count

812372 bp

Cytosine Count

811936 bp

Genome Length

3693233 bp

Protein-coding Genes

2992 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family proteinPEIBARAKI_5980Not AvailableNegative2384123 - 238587167225.0
susc/raga family tonb-linked outer membraneproteinPEIBARAKI_5981Not AvailableNegative2385886 - 2389122121360.0
hypothetical proteinPEIBARAKI_5982Not AvailableNegative2389382 - 239016429546.0
ragb/susd family proteinPEIBARAKI_5983Not AvailableNegative2390295 - 239206468545.1
susc/raga family tonb-linked outer membraneproteinPEIBARAKI_5984Not AvailableNegative2392076 - 2395288120749.0
hypothetical proteinPEIBARAKI_5985Not AvailableNegative2395494 - 239723367694.1
hypothetical proteinPEIBARAKI_5986Not AvailableNegative2397268 - 239904367357.1
susc/raga family tonb-linked outer membrane proteinPEIBARAKI_5987Not AvailableNegative2399064 - 2402105113336.0
lambda repressor-like dna-binding proteinPEIBARAKI_5988Not AvailablePositive2402977 - 240338415829.8
modification methylasePEIBARAKI_5989Not AvailablePositive2403626 - 240496652283.0

Displaying genes 2011 – 2020 of 3047 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.