Thioclava sp. JM3

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava sp. JM3 is a Gram-negative, rod-shaped bacterium. This specific strain is characterized by having a single replicon, which suggests a streamlined genetic organization that may contribute to its adaptability in various environments. The strain's accession number is NBOB00000000.1, indicating it is cataloged in a biological database for reference and further study. The Gram-negative classification of Thioclava sp. JM3 implies that it possesses an outer membrane, which is a significant feature that can influence its interactions with the environment and other microorganisms. This outer membrane can provide a barrier against certain antimicrobial agents and environmental stresses, thereby enhancing its survival in diverse habitats. The shape of the bacterium, being rod-like, can have implications for its motility and ability to form biofilms, which are communities of microorganisms that adhere to surfaces. Biofilm formation is an essential ecological trait among bacteria, allowing them to thrive in various environments, including aquatic and terrestrial ecosystems. Understanding the specific traits of Thioclava sp. JM3, including its Gram-negative nature and rod shape, can provide insights into its ecological roles, such as nutrient cycling and interactions within microbial communities. Further research on this bacterium could reveal additional ecological functions and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava sp. JM3
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava sp. JM3 contig42, whole genome shotgun sequence.

Gene Summary

Adenine Count

754693 bp

Thymine Count

761043 bp

Guanine Count

1340227 bp

Cytosine Count

1319841 bp

Genome Length

4175804 bp

Protein-coding Genes

3915 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
branched-chain alpha-keto acid dehydrogenase subunit e2B6V73_02520Not AvailableNegative533663 - 53482942096.8
Beta-ketoacyl-acp synthase iB6V73_02525Not AvailableNegative534829 - 53609143722.9
Diguanylate cyclaseB6V73_02530Not AvailableNegative536181 - 53762651224.1
hypothetical proteinB6V73_00005Not AvailablePositive1 - 2107703.24
16s ribosomal rnaNot AvailableNot AvailablePositive234 - 1706Not Available
hypothetical proteinB6V73_00010Not AvailableNegative347 - 64610668.5
rrf2 family transcriptional regulatorB6V73_00015Not AvailableNegative659 - 107814949.2
hypothetical proteinB6V73_00020Not AvailableNegative1232 - 163614629.9
23s ribosomal rnaNot AvailableNot AvailablePositive2325 - 5168Not Available
sodium:calcium antiporterB6V73_00025Not AvailableNegative1724 - 268933683.2

Displaying genes 21 – 30 of 3979 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

464 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 464 metabolites

Health Effects

No health effects information available for this bacterium.