Agrobacterium rosae str. NCPPB 1650

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium rosae str. NCPPB 1650 is a Gram-negative, rod-shaped bacterium known for its association with the plant host Rhododendron. This organism possesses flagella, which facilitate motility and may contribute to its ability to interact with plant tissues. The strain is characterized by having a single replicon, indicating a streamlined genomic organization that may enhance its adaptability and efficiency in its ecological niche. The unique relationship between Agrobacterium rosae and Rhododendron highlights the role of this bacterium in plant-microbe interactions. While specific pathogenic or symbiotic functions are not detailed, Agrobacterium species are generally recognized for their capacity to transfer genetic material to plants, a process that can lead to tumor formation or other alterations in plant physiology. This trait is significant in the context of plant biotechnology, where Agrobacterium is often utilized for gene transfer purposes. The genomic data for Agrobacterium rosae str. NCPPB 1650 is accessible under the accession number NXEJ00000000.1, providing a resource for further research into its genetic characteristics and potential applications. Understanding the ecological role of Agrobacterium rosae in its native environment may offer insights into its interactions with Rhododendron and other organisms, potentially influencing agricultural practices and the management of plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium rosae
StrainNCPPB 1650

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium rosae str. NCPPB 1650
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rhododendron
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium rosae strain NCPPB 1650 Contig_23, whole genome

Gene Summary

Adenine Count

1176142 bp

Thymine Count

1199150 bp

Guanine Count

1561595 bp

Cytosine Count

1527427 bp

Genome Length

5464393 bp

Protein-coding Genes

4957 genes

Non-Coding Genes

163 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pts iia-like nitrogen-regulatory protein ptsnCPJ18_00465Not AvailableNegative91133 - 9159416426.9
ribosomal subunit interface proteinCPJ18_00470Not AvailableNegative91676 - 9225121119.9
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive93256 - 93657Not Available
rna polymerase sigma-54 factorCPJ18_00475Not AvailableNegative92475 - 9402256938.9
lps export abc transporter atp-binding proteinCPJ18_00480Not AvailableNegative94204 - 9501629560.7
hypothetical proteinCPJ18_00485Not AvailableNegative95027 - 9560220178.1
lps export abc transporter periplasmic protein lptcCPJ18_00490Not AvailableNegative95616 - 9628123719.7
signal peptide peptidase sppaCPJ18_00495Not AvailablePositive96523 - 9747634851.3
integration host factor subunit betaCPJ18_00500Not AvailablePositive97503 - 9780811405.4
duf1049 domain-containing proteinCPJ18_00505Not AvailablePositive97894 - 9824412839.9

Displaying genes 261 – 270 of 5120 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.