Sinobacteraceae bacterium str. THS-13

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Nevskiales

Family

Nevskiaceae

Genus

Stagnimonas

Description

Sinobacteraceae bacterium str. THS-13 is characterized by having a single replicon, which indicates a streamlined genomic organization typical of many prokaryotic organisms. It has been cataloged under the accession number RJVO00000000.1, allowing for its identification and referencing in genomic databases. This bacterium is part of the Sinobacteraceae family, which consists of various species that have adapted to specific ecological niches. The single replicon structure may suggest a level of genetic stability and efficiency in replication, which could be beneficial for survival in its environment. Such traits are often observed in bacteria that thrive in specialized habitats, as they can maintain essential functions and adapt to varying conditions without the additional complexity of multiple replicons. In terms of ecological insight, the presence of Sinobacteraceae bacterium str. THS-13 within its ecosystem can play a significant role in nutrient cycling and microbial community dynamics. Bacteria from the Sinobacteraceae family may participate in various biogeochemical processes, contributing to the overall health and stability of their environment. Their specific adaptations and metabolic capabilities might allow them to interact closely with other microorganisms, influencing community structure and function. Understanding the characteristics of Sinobacteraceae bacterium str. THS-13 contributes to a broader comprehension of microbial diversity and its implications for ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderNevskiales
FamilyNevskiaceae
GenusStagnimonas
SpeciesStagnimonas aquatica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stagnimonas aquatica strain THS-13 contig15, whole genome shotgun

Gene Summary

Adenine Count

621977 bp

Thymine Count

608348 bp

Guanine Count

1276018 bp

Cytosine Count

1292594 bp

Genome Length

3799903 bp

Protein-coding Genes

3263 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rsmb/nop family class i sam-dependent rna methyltransferaseED208_02685Not AvailablePositive608729 - 60995242805.1
kpsf/gutq family sugar-phosphate isomeraseED208_02690Not AvailablePositive609988 - 61095933292.9
3-deoxy-d-manno-octulosonate 8-phosphate phosphataseED208_02695Not AvailablePositive610959 - 61147418593.6
lps export abc transporter periplasmic protein lptcED208_02700Not AvailablePositive611481 - 61203219724.4
lipopolysaccharide transport periplasmic protein lptaED208_02705Not AvailablePositive612016 - 61255819254.0
lps export abc transporter atp-binding proteinED208_02710Not AvailablePositive612555 - 61329526728.5
rna polymerase factor sigma-54ED208_02715Not AvailablePositive613382 - 61485454844.9
ribosome-associated translation inhibitor raiaED208_02720Not AvailablePositive614978 - 61530112274.7
pts iia-like nitrogen-regulatory protein ptsnED208_02725Not AvailablePositive615419 - 61587115812.0
hpr kinase/phosphorylaseED208_02730Not AvailablePositive615887 - 61671729428.5

Displaying genes 581 – 590 of 3348 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.