Sinobacteraceae bacterium str. THS-13

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Nevskiales

Family

Nevskiaceae

Genus

Stagnimonas

Description

Sinobacteraceae bacterium str. THS-13 is characterized by having a single replicon, which indicates a streamlined genomic organization typical of many prokaryotic organisms. It has been cataloged under the accession number RJVO00000000.1, allowing for its identification and referencing in genomic databases. This bacterium is part of the Sinobacteraceae family, which consists of various species that have adapted to specific ecological niches. The single replicon structure may suggest a level of genetic stability and efficiency in replication, which could be beneficial for survival in its environment. Such traits are often observed in bacteria that thrive in specialized habitats, as they can maintain essential functions and adapt to varying conditions without the additional complexity of multiple replicons. In terms of ecological insight, the presence of Sinobacteraceae bacterium str. THS-13 within its ecosystem can play a significant role in nutrient cycling and microbial community dynamics. Bacteria from the Sinobacteraceae family may participate in various biogeochemical processes, contributing to the overall health and stability of their environment. Their specific adaptations and metabolic capabilities might allow them to interact closely with other microorganisms, influencing community structure and function. Understanding the characteristics of Sinobacteraceae bacterium str. THS-13 contributes to a broader comprehension of microbial diversity and its implications for ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderNevskiales
FamilyNevskiaceae
GenusStagnimonas
SpeciesStagnimonas aquatica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stagnimonas aquatica strain THS-13 contig15, whole genome shotgun

Gene Summary

Adenine Count

621977 bp

Thymine Count

608348 bp

Guanine Count

1276018 bp

Cytosine Count

1292594 bp

Genome Length

3799903 bp

Protein-coding Genes

3263 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydrogenaseED208_16615Not AvailablePositive3737159 - 373825638703.8
aspartate-semialdehyde dehydrogenaseED208_16620Not AvailablePositive3738389 - 373950440019.6
aspartate-semialdehyde dehydrogenaseED208_16625Not AvailablePositive3739501 - 374051435392.6
hypothetical proteinED208_16630Not AvailablePositive3740688 - 3743711103453.0
trna pseudouridine(38-40) synthase truaED208_16635Not AvailablePositive3743781 - 374457529374.1
phosphoribosylanthranilate isomeraseED208_16640Not AvailablePositive3744572 - 374522223110.7
tryptophan synthase subunit betaED208_16645Not AvailablePositive3745228 - 374643643730.1
tryptophan synthase subunit alphaED208_16650Not AvailablePositive3746474 - 374728628112.2
acetyl-coa carboxylase carboxyltransferase subunit betaED208_16655Not AvailablePositive3747410 - 374827931845.0
bifunctional tetrahydrofolate synthase/dihydrofolate synthaseED208_16660Not AvailablePositive3748299 - 374953144126.2

Displaying genes 3291 – 3300 of 3348 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.