Rhodanobacter sp. C05

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Rhodanobacter

Description

Rhodanobacter sp. C05 is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses a single replicon, indicating a streamlined genetic organization. The strain is cataloged under the accession number MUNQ00000000.1, which provides a reference for scientific research and analysis. The classification of Rhodanobacter sp. C05 within the Rhodanobacter genus suggests an ecological role that may involve soil and plant interactions. Members of this genus are typically associated with the degradation of sulfur compounds, which can be significant in biogeochemical cycles. This trait highlights the potential of Rhodanobacter sp. C05 in environmental applications, particularly in bioremediation processes where the breakdown of harmful sulfide compounds is necessary. Furthermore, the Gram-negative nature of this bacterium may confer advantages in various environments, including resistance to certain antibiotics and the ability to thrive in diverse ecological niches. The rod shape can also be advantageous for nutrient absorption and motility, facilitating its survival in competitive environments. Overall, Rhodanobacter sp. C05 presents a promising subject for further investigation, particularly in its ecological functions and potential applications in environmental microbiology. Understanding its metabolic pathways and interactions within ecosystems could yield insights into sustainable practices for managing soil health and bioremediation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusRhodanobacter
SpeciesRhodanobacter sp. C05
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodanobacter sp. C05 NODE_20_length_5099_cov_12.7251_ID_39, whole

Gene Summary

Adenine Count

807252 bp

Thymine Count

793497 bp

Guanine Count

1308056 bp

Cytosine Count

1339819 bp

Genome Length

4248624 bp

Protein-coding Genes

3692 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphate abc transporter permease subunit pstcB0E51_04740Not AvailablePositive1113125 - 111414436384.7
phosphate abc transporter, permease protein pstaB0E51_04745Not AvailablePositive1114144 - 111501030884.6
phosphate abc transporter atp-binding proteinB0E51_04750Not AvailablePositive1115003 - 111581229896.4
phosphate transport system regulatory protein phouB0E51_04755Not AvailablePositive1116004 - 111672926804.8
hypothetical proteinB0E51_04760Not AvailableNegative1116745 - 111701710069.7
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbB0E51_04765Not AvailableNegative1117014 - 111776026486.0
ribonuclease rB0E51_04770Not AvailableNegative1117757 - 112032494721.1
Trna-leuNot AvailableNot AvailablePositive1120610 - 1120696Not Available
hypothetical proteinB0E51_04785Not AvailablePositive1121853 - 112225114224.7
voc family virulence proteinB0E51_04790Not AvailableNegative1122387 - 112279414796.8

Displaying genes 941 – 950 of 3749 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da
BASm0003701L-methionine (S)-S-oxideC5H11NO3SChemical structure of L-methionine (S)-S-oxide62697-73-8
Average165.21Da
Monoisotopic165.045964392Da
BASm0004122ADP-L-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-L-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da
BASm0004394zeaxanthin bis(beta-D-glucoside)C52H76O12Chemical structure of zeaxanthin bis(beta-D-glucoside)Not available
Average893.168Da
Monoisotopic892.5336779Da
BASm00068103-(methylsulfanyl)propanoyl-CoAC25H38N7O17P3S2Chemical structure of 3-(methylsulfanyl)propanoyl-CoANot available
Average865.65Da
Monoisotopic865.1000405Da
BASm00072473-(methylsulfanyl)acryloyl-CoAC25H36N7O17P3S2Chemical structure of 3-(methylsulfanyl)acryloyl-CoANot available
Average863.64Da
Monoisotopic863.0843904Da
BASm0008659propionate 3-nitronateC3H4NO4Chemical structure of propionate 3-nitronateNot available
Average118.069Da
Monoisotopic118.0145812Da
BASm0010884(7R,8S)-7,8-diammoniononanoateC9H21N2O2Chemical structure of (7R,8S)-7,8-diammoniononanoateNot available
Average189.278Da
Monoisotopic189.1597543Da

Displaying 1–10 of 11 metabolites

Health Effects

No health effects information available for this bacterium.