Rhodanobacter sp. C05

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Rhodanobacter

Description

Rhodanobacter sp. C05 is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses a single replicon, indicating a streamlined genetic organization. The strain is cataloged under the accession number MUNQ00000000.1, which provides a reference for scientific research and analysis. The classification of Rhodanobacter sp. C05 within the Rhodanobacter genus suggests an ecological role that may involve soil and plant interactions. Members of this genus are typically associated with the degradation of sulfur compounds, which can be significant in biogeochemical cycles. This trait highlights the potential of Rhodanobacter sp. C05 in environmental applications, particularly in bioremediation processes where the breakdown of harmful sulfide compounds is necessary. Furthermore, the Gram-negative nature of this bacterium may confer advantages in various environments, including resistance to certain antibiotics and the ability to thrive in diverse ecological niches. The rod shape can also be advantageous for nutrient absorption and motility, facilitating its survival in competitive environments. Overall, Rhodanobacter sp. C05 presents a promising subject for further investigation, particularly in its ecological functions and potential applications in environmental microbiology. Understanding its metabolic pathways and interactions within ecosystems could yield insights into sustainable practices for managing soil health and bioremediation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusRhodanobacter
SpeciesRhodanobacter sp. C05
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodanobacter sp. C05 NODE_20_length_5099_cov_12.7251_ID_39, whole

Gene Summary

Adenine Count

807252 bp

Thymine Count

793497 bp

Guanine Count

1308056 bp

Cytosine Count

1339819 bp

Genome Length

4248624 bp

Protein-coding Genes

3692 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter atp-binding proteinB0E51_18480Not AvailableNegative4141953 - 414267526573.8
efflux transporter periplasmic adaptor subunitB0E51_18485Not AvailableNegative4142855 - 414412645493.4
hypothetical proteinB0E51_18490Not AvailableNegative4144317 - 414487720368.5
hemin transporter hempB0E51_18495Not AvailableNegative4144991 - 41451917194.81
alcohol dehydrogenaseB0E51_18500Not AvailableNegative4145286 - 414626036321.4
alcohol dehydrogenaseB0E51_18505Not AvailablePositive4146400 - 414740734955.2
hypothetical proteinB0E51_18510Not AvailableNegative4147567 - 414836128669.8
phosphatidylglycerophosphatase aB0E51_18515Not AvailableNegative4148599 - 414912319021.0
thiamine-phosphate kinaseB0E51_18520Not AvailableNegative4149120 - 415008833693.0
gnat family n-acetyltransferaseB0E51_18525Not AvailableNegative4150116 - 415066420521.6

Displaying genes 3651 – 3660 of 3749 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da
BASm0003701L-methionine (S)-S-oxideC5H11NO3SChemical structure of L-methionine (S)-S-oxide62697-73-8
Average165.21Da
Monoisotopic165.045964392Da
BASm0004122ADP-L-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-L-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da
BASm0004394zeaxanthin bis(beta-D-glucoside)C52H76O12Chemical structure of zeaxanthin bis(beta-D-glucoside)Not available
Average893.168Da
Monoisotopic892.5336779Da
BASm00068103-(methylsulfanyl)propanoyl-CoAC25H38N7O17P3S2Chemical structure of 3-(methylsulfanyl)propanoyl-CoANot available
Average865.65Da
Monoisotopic865.1000405Da
BASm00072473-(methylsulfanyl)acryloyl-CoAC25H36N7O17P3S2Chemical structure of 3-(methylsulfanyl)acryloyl-CoANot available
Average863.64Da
Monoisotopic863.0843904Da
BASm0008659propionate 3-nitronateC3H4NO4Chemical structure of propionate 3-nitronateNot available
Average118.069Da
Monoisotopic118.0145812Da
BASm0010884(7R,8S)-7,8-diammoniononanoateC9H21N2O2Chemical structure of (7R,8S)-7,8-diammoniononanoateNot available
Average189.278Da
Monoisotopic189.1597543Da

Displaying 1–10 of 11 metabolites

Health Effects

No health effects information available for this bacterium.