Polynucleobacter brandtiae

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Polynucleobacter

Description

Polynucleobacter brandtiae is a rod-shaped bacterium characterized by possessing a single replicon. This trait indicates a streamlined genomic organization, which may contribute to its efficiency in replication and adaptation within its ecological niche. The taxonomic classification of Polynucleobacter brandtiae is supported by its genetic material, with a reference accession number of PGTX00000000.1 available for further genomic studies. As a member of the Polynucleobacter genus, this bacterium is likely involved in freshwater ecosystems, where it plays a role in nutrient cycling and microbial diversity. The rod shape of Polynucleobacter brandtiae suggests that it may be well-adapted for movement in aquatic environments, potentially facilitating its interactions with other microorganisms and organic matter. The presence of Polynucleobacter species in freshwater habitats often correlates with specific environmental conditions, such as organic carbon availability and microbial community composition. Understanding the traits of Polynucleobacter brandtiae, including its morphology and genetic structure, can provide insights into its ecological functions and contributions to freshwater microbial dynamics. Its single-replicon feature may reflect adaptations that optimize its survival and growth in fluctuating environments, highlighting the importance of genomic organization in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPolynucleobacter
SpeciesPolynucleobacter brandtiae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polynucleobacter brandtiae strain UB-Domo-W1 Ga0139088_119, whole

Gene Summary

Adenine Count

552843 bp

Thymine Count

537273 bp

Guanine Count

437881 bp

Cytosine Count

474345 bp

Genome Length

2002342 bp

Protein-coding Genes

1994 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosomal small subunit pseudouridine synthase aB0G85_0838Not AvailableNegative789950 - 79069027949.5
protein of unknown function (duf2889)B0G85_0839Not AvailablePositive790799 - 79133219962.9
3-hydroxy acid dehydrogenase/malonic semialdehyde reductaseB0G85_0840Not AvailableNegative791340 - 79214929051.8
glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily ii)B0G85_0841Not AvailableNegative792211 - 79314935133.0
apolipoprotein d and lipocalin family proteinB0G85_0842Not AvailableNegative793151 - 79374122149.8
sulfoxide reductase heme-binding subunit yedzB0G85_0843Not AvailableNegative793734 - 79432122938.8
sulfoxide reductase catalytic subunit yedyB0G85_0844Not AvailableNegative794346 - 79530836145.5
ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolaseB0G85_0845Not AvailableNegative795562 - 79621824143.2
uncharacterized protein ygbk (duf1537 family)B0G85_0846Not AvailableNegative796211 - 79750045833.0
3-hydroxyisobutyrate dehydrogenaseB0G85_0847Not AvailableNegative797497 - 79839031181.7

Displaying genes 831 – 840 of 2041 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.