Sphingobacterium sp. B29

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium sp. B29 is characterized by its rod-shaped morphology and possesses a single replicon, which is indicative of its genomic organization. The genomic information for this bacterium is cataloged under the accession number NZ_CP019158.1. Sphingobacterium species are generally known for their role in various ecological niches, particularly in soil and aquatic environments. They are often associated with the degradation of complex organic compounds, contributing to nutrient cycling within their ecosystems. The presence of Sphingobacterium sp. B29 may indicate its potential utility in bioremediation processes or in the breakdown of pollutants, although specific metabolic capabilities of this strain are not detailed in the provided data. The rod shape of Sphingobacterium sp. B29 may confer certain advantages in terms of motility and surface area-to-volume ratio, which can be important for nutrient uptake and interaction with the surrounding environment. Understanding the specific ecological roles and interactions of Sphingobacterium sp. B29 requires further investigation, particularly in terms of its metabolic pathways and capabilities. Such insights could elucidate its function in its native habitat and potential applications in environmental biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp. B29
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium sp. B29
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium sp. B29 chromosome, complete genome.

Gene Summary

Adenine Count

1909032 bp

Thymine Count

1908389 bp

Guanine Count

1271939 bp

Cytosine Count

1267825 bp

Genome Length

6357185 bp

Protein-coding Genes

5325 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uxaa family hydrolaseBV902_RS00255Not AvailablePositive53617 - 5526359629.4
glucuronate isomeraseBV902_RS00260Not AvailablePositive55278 - 5667854045.1
sugar kinaseBV902_RS00265Not AvailablePositive56684 - 5770938301.7
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolaseBV902_RS00270Not AvailablePositive57706 - 5835023814.1
mfs transporterBV902_RS00275Not AvailablePositive58454 - 5988753224.1
nadp-dependent glyceraldehyde-3-phosphate dehydrogenaseBV902_RS00280Not AvailablePositive59959 - 6157860213.6
rhamnogalacturonan acetylesteraseBV902_RS00285Not AvailableNegative61790 - 6255728857.7
duf5123 domain-containing proteinBV902_RS00290Not AvailableNegative62626 - 6418255772.3
ragb/susd family nutrient uptake outer membrane proteinBV902_RS00295Not AvailableNegative64198 - 6597966869.9
susc/raga family tonb-linked outer membrane proteinBV902_RS00300Not AvailableNegative65984 - 69178118160.0

Displaying genes 51 – 60 of 5422 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.