Sphingomonadaceae bacterium

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Description

The Sphingomonadaceae bacterium is characterized by having a total of five replicons, which indicates a complex genomic structure that may contribute to its adaptability and metabolic versatility. The specific accessions associated with this bacterium are NZAR00000000.1, NZMZ00000000.1, NZDO00000000.1, NYUG00000000.1, and PBLE00000000.1. These accessions are unique identifiers for genomic sequences that provide valuable information regarding its classification and phylogenetic relationships within the Sphingomonadaceae family. This bacterium belongs to a family known for its diverse metabolic capabilities, often involving the degradation of complex organic compounds, which is significant in various ecological contexts, including bioremediation processes. The presence of multiple replicons can be advantageous for the bacterium, as it may allow for the regulation of different sets of genes, potentially enhancing its ability to thrive in varied environments or respond to environmental stresses. Understanding the genomic architecture and ecological roles of Sphingomonadaceae bacteria can provide insights into their potential applications in environmental microbiology, particularly in the degradation of pollutants and the maintenance of ecosystem health. This bacterium exemplifies the complexity and utility of microbial life in natural and engineered environments.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sphingomonadaceae bacterium isolate SP246 151611, whole

Gene Summary

Adenine Count

546419 bp

Thymine Count

551694 bp

Guanine Count

913631 bp

Cytosine Count

917666 bp

Genome Length

2948989 bp

Protein-coding Genes

2688 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
p-type conjugative transfer atpase trbbCMN67_16230Not AvailableNegative3308880 - 330986634534.0
ribbon-helix-helix protein, copg familyCMN67_16235Not AvailableNegative3310007 - 331042615741.8
conjugal transfer protein tragCMN67_16240Not AvailableNegative3310423 - 331245374588.8
hypothetical proteinCMN67_16245Not AvailablePositive3312695 - 331321919207.4
sam-dependent dna methyltransferaseCMN67_16250Not AvailablePositive3313216 - 331572393226.2
pin domain-containing proteinCMN67_16255Not AvailablePositive3315727 - 331622418244.0
duf3363 domain-containing proteinCMN67_16260Not AvailableNegative3316273 - 331800364119.4
lytic transglycosylase domain-containing proteinCMN67_16265Not AvailableNegative3318263 - 331916531323.4
duf736 domain-containing proteinCMN67_16270Not AvailableNegative3319169 - 331950112351.3
conjugal transfer proteinCMN67_16275Not AvailableNegative3319482 - 332006020432.8

Displaying genes 5921 – 5930 of 13237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.