Sphingomonadaceae bacterium

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Description

The Sphingomonadaceae bacterium is characterized by having a total of five replicons, which indicates a complex genomic structure that may contribute to its adaptability and metabolic versatility. The specific accessions associated with this bacterium are NZAR00000000.1, NZMZ00000000.1, NZDO00000000.1, NYUG00000000.1, and PBLE00000000.1. These accessions are unique identifiers for genomic sequences that provide valuable information regarding its classification and phylogenetic relationships within the Sphingomonadaceae family. This bacterium belongs to a family known for its diverse metabolic capabilities, often involving the degradation of complex organic compounds, which is significant in various ecological contexts, including bioremediation processes. The presence of multiple replicons can be advantageous for the bacterium, as it may allow for the regulation of different sets of genes, potentially enhancing its ability to thrive in varied environments or respond to environmental stresses. Understanding the genomic architecture and ecological roles of Sphingomonadaceae bacteria can provide insights into their potential applications in environmental microbiology, particularly in the degradation of pollutants and the maintenance of ecosystem health. This bacterium exemplifies the complexity and utility of microbial life in natural and engineered environments.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sphingomonadaceae bacterium isolate SP246 151611, whole

Gene Summary

Adenine Count

546419 bp

Thymine Count

551694 bp

Guanine Count

913631 bp

Cytosine Count

917666 bp

Genome Length

2948989 bp

Protein-coding Genes

2688 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i glyceraldehyde-3-phosphate dehydrogenaseCMN67_00855Not AvailableNegative198400 - 19940735872.6
transketolaseCMN67_00860Not AvailableNegative199424 - 20141571962.5
hypothetical proteinCMN67_00865Not AvailablePositive201414 - 20180014496.1
cell division protein zapaCMN67_00870Not AvailablePositive201797 - 20212011162.9
5-formyltetrahydrofolate cyclo-ligaseCMN67_00875Not AvailablePositive202367 - 20293921033.1
hypothetical proteinCMN67_00880Not AvailablePositive202936 - 2031518220.6
Trna-aspNot AvailableNot AvailablePositive203270 - 203346Not Available
branched-chain alpha-keto acid dehydrogenase subunit e2CMN67_00890Not AvailableNegative203719 - 20502646930.9
alpha-ketoacid dehydrogenase subunit betaCMN67_00895Not AvailableNegative205032 - 20603036561.8
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alphaCMN67_00900Not AvailableNegative206090 - 20739148032.5

Displaying genes 2961 – 2970 of 13237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.