Sphingomonadaceae bacterium

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Description

The Sphingomonadaceae bacterium is characterized by having a total of five replicons, which indicates a complex genomic structure that may contribute to its adaptability and metabolic versatility. The specific accessions associated with this bacterium are NZAR00000000.1, NZMZ00000000.1, NZDO00000000.1, NYUG00000000.1, and PBLE00000000.1. These accessions are unique identifiers for genomic sequences that provide valuable information regarding its classification and phylogenetic relationships within the Sphingomonadaceae family. This bacterium belongs to a family known for its diverse metabolic capabilities, often involving the degradation of complex organic compounds, which is significant in various ecological contexts, including bioremediation processes. The presence of multiple replicons can be advantageous for the bacterium, as it may allow for the regulation of different sets of genes, potentially enhancing its ability to thrive in varied environments or respond to environmental stresses. Understanding the genomic architecture and ecological roles of Sphingomonadaceae bacteria can provide insights into their potential applications in environmental microbiology, particularly in the degradation of pollutants and the maintenance of ecosystem health. This bacterium exemplifies the complexity and utility of microbial life in natural and engineered environments.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sphingomonadaceae bacterium isolate SP246 151611, whole

Gene Summary

Adenine Count

546419 bp

Thymine Count

551694 bp

Guanine Count

913631 bp

Cytosine Count

917666 bp

Genome Length

2948989 bp

Protein-coding Genes

2688 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s1CMN66_08605Not AvailablePositive1667847 - 166882435594.4
dna polymerase ivCMN66_08610Not AvailablePositive1668856 - 166986336914.7
dna mismatch repair protein muttCMN66_08615Not AvailableNegative1669860 - 167033017297.9
6-phosphogluconolactonaseCMN66_08620Not AvailableNegative1670318 - 167093821745.0
dna starvation/stationary phase protection proteinCMN66_08625Not AvailableNegative1671024 - 167148516807.5
hypothetical proteinCMN66_08630Not AvailableNegative1671595 - 167213718076.6
3-hydroxy-2-methylbutyryl-coa dehydrogenaseCMN66_08635Not AvailablePositive1672238 - 167303228087.7
Trna-glyNot AvailableNot AvailablePositive1673049 - 1673122Not Available
cysteine synthaseCMN66_08645Not AvailablePositive1673239 - 167430938073.9
methylmalonate-semialdehyde dehydrogenase (coa acylating)CMN66_08655Not AvailablePositive1675649 - 167714553060.4

Displaying genes 12461 – 12470 of 13237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.