Croceivirga radicis str. HSG9

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Croceivirga

Description

Croceivirga radicis str. HSG9 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and motility. It thrives optimally at a temperature of 29°C, placing it within the mesophilic temperature range. The organism possesses a single replicon, indicating a streamlined genetic structure, which may contribute to its adaptability in various environments. The Gram-negative classification of Croceivirga radicis str. HSG9 suggests it has a distinct cell wall structure, typically characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. This structural feature often confers certain advantages, such as resistance to specific antibiotics and the ability to interact with a variety of environments and hosts. The aerobe nature of Croceivirga radicis str. HSG9 indicates that it requires oxygen for growth, which may influence its ecological niche, likely associating it with environments rich in organic matter that support aerobic processes. The complete genome of Croceivirga radicis str. HSG9 is cataloged under the accession MTBC00000000.1, facilitating further research into its genetic and metabolic capabilities. In summary, Croceivirga radicis str. HSG9 exemplifies a motile, aerobic bacterium with specific temperature preferences, suggesting potential roles in soil ecosystems or plant interactions, where oxygen-rich conditions prevail. Its unique traits could be significant in understanding microbial community dynamics and nutrient cycling in such environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusCroceivirga
SpeciesCroceivirga radicis
StrainHSG9

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacteriaceae bacterium HSG9 contig43, whole genome shotgun

Gene Summary

Adenine Count

1135972 bp

Thymine Count

1133632 bp

Guanine Count

662374 bp

Cytosine Count

678608 bp

Genome Length

3610586 bp

Protein-coding Genes

3078 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBUL40_15120Not AvailablePositive3486970 - 348791435723.6
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseBUL40_15125Not AvailableNegative3488035 - 348930947359.7
gliding motility lipoprotein gldjBUL40_15130Not AvailableNegative3489377 - 349102962888.2
hypothetical proteinBUL40_15135Not AvailablePositive3491358 - 349250342450.5
cytidine deaminaseBUL40_15140Not AvailablePositive3492580 - 349307117616.1
pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alphaBUL40_15145Not AvailablePositive3493153 - 349415137546.1
pyruvate dehydrogenaseBUL40_15150Not AvailablePositive3494156 - 349580858465.9
peptidase m28BUL40_15155Not AvailablePositive3495888 - 349694038177.3
short-chain dehydrogenaseBUL40_15160Not AvailablePositive3496940 - 349762024749.8
glycogen debranching proteinBUL40_15165Not AvailableNegative3497622 - 350002491409.1

Displaying genes 3011 – 3020 of 3122 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.