Oharaeibacter diazotrophicus str. DSM 102969

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Pleomorphomonadaceae

Genus

Oharaeibacter

Description

Oharaeibacter diazotrophicus str. DSM 102969 is a Gram-negative, aerobic bacterium primarily found in the rice rhizosphere, where it plays a potential role in the soil microbiome associated with Oryza sativa, commonly known as rice. This bacterium exhibits a rod shape and thrives optimally at a temperature of 29°C, fitting within a mesophilic temperature range. Oharaeibacter diazotrophicus is characterized by having a single replicon and is non-spore-forming, which indicates a reliance on stable environmental conditions for survival and reproduction. Its isolation from the rice rhizosphere suggests that it may contribute to the nitrogen cycle, possibly enhancing soil fertility through nitrogen fixation, a trait commonly associated with diazotrophic bacteria. The ecological insights gathered from studying this bacterium highlight its importance in agricultural systems, particularly in rice cultivation. By inhabiting the root zones of rice plants, Oharaeibacter diazotrophicus may interact with plant roots and other microbial communities, potentially influencing nutrient availability and plant health. Understanding the dynamics of such bacteria could offer valuable strategies for sustainable agricultural practices, emphasizing the role of beneficial microbes in enhancing crop resilience and productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPleomorphomonadaceae
GenusOharaeibacter
SpeciesOharaeibacter diazotrophicus
StrainDSM 102969

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
Habitatrice rhizosphere
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oharaeibacter diazotrophicus strain DSM 102969 Ga0244730_109,

Gene Summary

Adenine Count

713704 bp

Thymine Count

703491 bp

Guanine Count

1795972 bp

Cytosine Count

1778725 bp

Genome Length

4991892 bp

Protein-coding Genes

4457 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcription elongation grea/greb family factorEDD54_2437Not AvailableNegative2621069 - 262154816972.9
slyx proteinEDD54_2438Not AvailableNegative2621558 - 26217798327.86
hypothetical proteinEDD54_2439Not AvailablePositive2621884 - 262238718258.1
Tmrna,resume consensus sequence (at 198): tatagttgcgaatgacaaNot AvailableNot AvailablePositive2622419 - 2622752Not Available
hypothetical proteinEDD54_2460Not AvailableNegative2638894 - 263919910927.0
hypothetical proteinEDD54_2461Not AvailablePositive2639630 - 264021420689.5
fumarase class iiEDD54_2462Not AvailablePositive2640286 - 264168348799.3
uncharacterized protein duf4169EDD54_2463Not AvailablePositive2641754 - 26419397106.33
putative dna-binding ribbon-helix-helix proteinEDD54_2464Not AvailablePositive2641953 - 26421717634.0
phosphoserine phosphataseEDD54_2465Not AvailableNegative2642182 - 264306630535.9

Displaying genes 2471 – 2480 of 4567 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.