Oharaeibacter diazotrophicus str. DSM 102969

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Pleomorphomonadaceae

Genus

Oharaeibacter

Description

Oharaeibacter diazotrophicus str. DSM 102969 is a Gram-negative, aerobic bacterium primarily found in the rice rhizosphere, where it plays a potential role in the soil microbiome associated with Oryza sativa, commonly known as rice. This bacterium exhibits a rod shape and thrives optimally at a temperature of 29°C, fitting within a mesophilic temperature range. Oharaeibacter diazotrophicus is characterized by having a single replicon and is non-spore-forming, which indicates a reliance on stable environmental conditions for survival and reproduction. Its isolation from the rice rhizosphere suggests that it may contribute to the nitrogen cycle, possibly enhancing soil fertility through nitrogen fixation, a trait commonly associated with diazotrophic bacteria. The ecological insights gathered from studying this bacterium highlight its importance in agricultural systems, particularly in rice cultivation. By inhabiting the root zones of rice plants, Oharaeibacter diazotrophicus may interact with plant roots and other microbial communities, potentially influencing nutrient availability and plant health. Understanding the dynamics of such bacteria could offer valuable strategies for sustainable agricultural practices, emphasizing the role of beneficial microbes in enhancing crop resilience and productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPleomorphomonadaceae
GenusOharaeibacter
SpeciesOharaeibacter diazotrophicus
StrainDSM 102969

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
Habitatrice rhizosphere
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oharaeibacter diazotrophicus strain DSM 102969 Ga0244730_109,

Gene Summary

Adenine Count

713704 bp

Thymine Count

703491 bp

Guanine Count

1795972 bp

Cytosine Count

1778725 bp

Genome Length

4991892 bp

Protein-coding Genes

4457 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein translocase subunit secf /protein translocase subunit secdEDD54_2820Not AvailablePositive3022304 - 302482088208.7
hydroxypyruvate isomeraseEDD54_2821Not AvailablePositive3024936 - 302571528049.8
formyltetrahydrofolate deformylaseEDD54_2822Not AvailablePositive3025852 - 302673632690.2
asp/glu/hydantoin racemaseEDD54_2823Not AvailablePositive3026806 - 302755225390.9
nitt/taut family transport system substrate-binding proteinEDD54_2824Not AvailablePositive3027825 - 302888037497.2
nitt/taut family transport system permease proteinEDD54_2825Not AvailablePositive3028952 - 302985132377.7
nitt/taut family transport system atp-binding proteinEDD54_2826Not AvailablePositive3029848 - 303063328570.5
putative amidohydrolaseEDD54_2827Not AvailablePositive3030642 - 303150228886.4
cytosine/adenosine deaminase-related metal-dependent hydrolaseEDD54_2828Not AvailablePositive3031499 - 303303756547.6
guanine deaminase/5-methylthioadenosine/s-adenosylhomocysteine deaminaseEDD54_2829Not AvailablePositive3033057 - 303456553955.1

Displaying genes 2831 – 2840 of 4567 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.