Oharaeibacter diazotrophicus str. DSM 102969

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Pleomorphomonadaceae

Genus

Oharaeibacter

Description

Oharaeibacter diazotrophicus str. DSM 102969 is a Gram-negative, aerobic bacterium primarily found in the rice rhizosphere, where it plays a potential role in the soil microbiome associated with Oryza sativa, commonly known as rice. This bacterium exhibits a rod shape and thrives optimally at a temperature of 29°C, fitting within a mesophilic temperature range. Oharaeibacter diazotrophicus is characterized by having a single replicon and is non-spore-forming, which indicates a reliance on stable environmental conditions for survival and reproduction. Its isolation from the rice rhizosphere suggests that it may contribute to the nitrogen cycle, possibly enhancing soil fertility through nitrogen fixation, a trait commonly associated with diazotrophic bacteria. The ecological insights gathered from studying this bacterium highlight its importance in agricultural systems, particularly in rice cultivation. By inhabiting the root zones of rice plants, Oharaeibacter diazotrophicus may interact with plant roots and other microbial communities, potentially influencing nutrient availability and plant health. Understanding the dynamics of such bacteria could offer valuable strategies for sustainable agricultural practices, emphasizing the role of beneficial microbes in enhancing crop resilience and productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPleomorphomonadaceae
GenusOharaeibacter
SpeciesOharaeibacter diazotrophicus
StrainDSM 102969

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
Habitatrice rhizosphere
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oharaeibacter diazotrophicus str. DSM 102969


Gene Summary

Adenine Count

713704 bp

Thymine Count

703491 bp

Guanine Count

1795972 bp

Cytosine Count

1778725 bp

Genome Length

4991892 bp

Protein-coding Genes

4457 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
quercetin dioxygenase-like cupin family proteinEDD54_1989Not AvailablePositive2150448 - 215084313969.4
hydroxypyruvate isomeraseEDD54_1990Not AvailablePositive2150950 - 215172328181.7
l-lysine exporter family protein lyse/argoEDD54_1991Not AvailableNegative2151737 - 215236920738.7
lysr family transcriptional regulator (chromosome initiation inhibitor)EDD54_1992Not AvailablePositive2152443 - 215338131904.3
hypothetical proteinEDD54_1993Not AvailablePositive2153384 - 215383914959.8
hypothetical proteinEDD54_1994Not AvailablePositive2153851 - 215428814701.2
dihydrodipicolinate reductaseEDD54_1995Not AvailableNegative2154330 - 215512726600.8
rna polymerase ecf family sigma subunitEDD54_1996Not AvailablePositive2155276 - 215584520864.9
anti-sigma-k factor rskaEDD54_1997Not AvailablePositive2155842 - 215659725718.8
putative intracellular protease/amidaseEDD54_1998Not AvailableNegative2156610 - 215718519671.3

Displaying genes 2061 – 2070 of 4567 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.