Oharaeibacter diazotrophicus str. DSM 102969

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Pleomorphomonadaceae

Genus

Oharaeibacter

Description

Oharaeibacter diazotrophicus str. DSM 102969 is a Gram-negative, aerobic bacterium primarily found in the rice rhizosphere, where it plays a potential role in the soil microbiome associated with Oryza sativa, commonly known as rice. This bacterium exhibits a rod shape and thrives optimally at a temperature of 29°C, fitting within a mesophilic temperature range. Oharaeibacter diazotrophicus is characterized by having a single replicon and is non-spore-forming, which indicates a reliance on stable environmental conditions for survival and reproduction. Its isolation from the rice rhizosphere suggests that it may contribute to the nitrogen cycle, possibly enhancing soil fertility through nitrogen fixation, a trait commonly associated with diazotrophic bacteria. The ecological insights gathered from studying this bacterium highlight its importance in agricultural systems, particularly in rice cultivation. By inhabiting the root zones of rice plants, Oharaeibacter diazotrophicus may interact with plant roots and other microbial communities, potentially influencing nutrient availability and plant health. Understanding the dynamics of such bacteria could offer valuable strategies for sustainable agricultural practices, emphasizing the role of beneficial microbes in enhancing crop resilience and productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPleomorphomonadaceae
GenusOharaeibacter
SpeciesOharaeibacter diazotrophicus
StrainDSM 102969

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
Habitatrice rhizosphere
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oharaeibacter diazotrophicus str. DSM 102969


Gene Summary

Adenine Count

713704 bp

Thymine Count

703491 bp

Guanine Count

1795972 bp

Cytosine Count

1778725 bp

Genome Length

4991892 bp

Protein-coding Genes

4457 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl-coa synthetase (amp-forming)/amp-acid ligase iiEDD54_1444Not AvailableNegative1551438 - 155303656289.4
mannose-6-phosphate isomerase type 3EDD54_1445Not AvailableNegative1553126 - 155431342856.9
3'(2'), 5'-bisphosphate nucleotidaseEDD54_1446Not AvailableNegative1554378 - 155519027666.6
nitt/taut family transport system permease proteinEDD54_1447Not AvailablePositive1555453 - 155621427466.3
nitt/taut family transport system atp-binding proteinEDD54_1448Not AvailablePositive1556198 - 155691726189.8
l-threonine ammonia-lyaseEDD54_1449Not AvailablePositive1557167 - 155809631506.6
pqq-dependent catabolism-associated cxxcw motif proteinEDD54_1450Not AvailableNegative1558194 - 155877220517.4
amino acid abc transporter substrate-binding protein (paat family)EDD54_1451Not AvailableNegative1558893 - 155973530841.2
methanol metabolism-related c-type cytochromeEDD54_1452Not AvailableNegative1559934 - 156045218824.1
pqq-dependent dehydrogenase (methanol/ethanol family)EDD54_1453Not AvailableNegative1560881 - 156268664535.0

Displaying genes 1521 – 1530 of 4567 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.