Sphingopyxis sp. FD7

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. FD7 is a rod-shaped bacterium characterized by its unique genetic composition, possessing two replicons. The organism is cataloged under the accessions NZ_AP017899.1 and NZ_AP017898.1, which provide essential genomic information for further studies and classification. The rod shape of Sphingopyxis sp. FD7 suggests a potential adaptability to various habitats, as this morphology is common among bacteria that thrive in diverse environmental conditions. Furthermore, the presence of two replicons may indicate a complex regulatory network for gene expression and replication, which could enhance its survival and metabolic capabilities. Given its classification within the Sphingopyxis genus, this bacterium may play a role in biogeochemical cycles, particularly in the degradation of organic compounds. Sphingopyxis species are often associated with environments rich in organic matter, where they contribute to nutrient cycling by breaking down complex molecules. In summary, the rod-shaped Sphingopyxis sp. FD7, with its dual replicon structure, embodies traits that may facilitate its ecological role in organic matter decomposition. This positioning within the environment underscores the significance of Sphingopyxis sp. FD7 in microbial communities and its potential contributions to ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. FD7
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. FD7 chromosome, complete genome.

Gene Summary

Adenine Count

643589 bp

Thymine Count

635144 bp

Guanine Count

1202579 bp

Cytosine Count

1214302 bp

Genome Length

3695614 bp

Protein-coding Genes

3481 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abrb/maze/spovt family dna-binding domain-containing proteinSPYCA_RS16995Not AvailablePositive3507432 - 350771910490.6
type ii toxin-antitoxin system vapc family toxinSPYCA_RS17000Not AvailablePositive3507716 - 350809613737.5
trna (guanosine(37)-n1)-methyltransferase trmdSPYCA_RS17005Not AvailablePositive3508093 - 350883926727.0
50s ribosomal protein l19SPYCA_RS17010Not AvailablePositive3508836 - 350921313950.8
aspartate-semialdehyde dehydrogenaseSPYCA_RS17015Not AvailablePositive3509322 - 351034737088.2
duf2238 domain-containing proteinSPYCA_RS17020Not AvailablePositive3510517 - 351116423129.2
m61 family metallopeptidaseSPYCA_RS17025Not AvailableNegative3511238 - 351317571724.9
histidine--trna ligaseSPYCA_RS17030Not AvailablePositive3513296 - 351459147206.9
giy-yig nuclease family proteinSPYCA_RS17035Not AvailableNegative3514682 - 351500812682.2
peptide chain release factor 1SPYCA_RS17040Not AvailablePositive3515080 - 351614738757.2

Displaying genes 3431 – 3440 of 3822 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.