Sphingopyxis sp. FD7

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. FD7 is a rod-shaped bacterium characterized by its unique genetic composition, possessing two replicons. The organism is cataloged under the accessions NZ_AP017899.1 and NZ_AP017898.1, which provide essential genomic information for further studies and classification. The rod shape of Sphingopyxis sp. FD7 suggests a potential adaptability to various habitats, as this morphology is common among bacteria that thrive in diverse environmental conditions. Furthermore, the presence of two replicons may indicate a complex regulatory network for gene expression and replication, which could enhance its survival and metabolic capabilities. Given its classification within the Sphingopyxis genus, this bacterium may play a role in biogeochemical cycles, particularly in the degradation of organic compounds. Sphingopyxis species are often associated with environments rich in organic matter, where they contribute to nutrient cycling by breaking down complex molecules. In summary, the rod-shaped Sphingopyxis sp. FD7, with its dual replicon structure, embodies traits that may facilitate its ecological role in organic matter decomposition. This positioning within the environment underscores the significance of Sphingopyxis sp. FD7 in microbial communities and its potential contributions to ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. FD7
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. FD7 chromosome, complete genome.

Gene Summary

Adenine Count

643589 bp

Thymine Count

635144 bp

Guanine Count

1202579 bp

Cytosine Count

1214302 bp

Genome Length

3695614 bp

Protein-coding Genes

3481 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
signal recognition particle-docking protein ftsySPYCA_RS16950Not AvailableNegative3497517 - 349844332714.6
miab/rimo family radical sam methylthiotransferaseSPYCA_RS16955Not AvailableNegative3498440 - 349969344393.0
diaminopimelate epimeraseSPYCA_RS16960Not AvailableNegative3499690 - 350049628424.0
putative bifunctional diguanylate cyclase/phosphodiesteraseSPYCA_RS16965Not AvailableNegative3500548 - 350217959116.5
signal recognition particle proteinSPYCA_RS16970Not AvailablePositive3502427 - 350389351347.6
dutp diphosphataseSPYCA_RS16975Not AvailablePositive3503931 - 350438016041.6
ribosome maturation factor rimmSPYCA_RS16980Not AvailablePositive3504513 - 350500417004.3
ompa family proteinSPYCA_RS16985Not AvailablePositive3505206 - 350609030942.6
hypothetical proteinSPYCA_RS19350Not AvailableNegative3506183 - 35063506362.79
lysr substrate-binding domain-containing proteinSPYCA_RS16990Not AvailablePositive3506453 - 350737334145.1

Displaying genes 3421 – 3430 of 3822 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.