Sphingopyxis sp. FD7

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. FD7 is a rod-shaped bacterium characterized by its unique genetic composition, possessing two replicons. The organism is cataloged under the accessions NZ_AP017899.1 and NZ_AP017898.1, which provide essential genomic information for further studies and classification. The rod shape of Sphingopyxis sp. FD7 suggests a potential adaptability to various habitats, as this morphology is common among bacteria that thrive in diverse environmental conditions. Furthermore, the presence of two replicons may indicate a complex regulatory network for gene expression and replication, which could enhance its survival and metabolic capabilities. Given its classification within the Sphingopyxis genus, this bacterium may play a role in biogeochemical cycles, particularly in the degradation of organic compounds. Sphingopyxis species are often associated with environments rich in organic matter, where they contribute to nutrient cycling by breaking down complex molecules. In summary, the rod-shaped Sphingopyxis sp. FD7, with its dual replicon structure, embodies traits that may facilitate its ecological role in organic matter decomposition. This positioning within the environment underscores the significance of Sphingopyxis sp. FD7 in microbial communities and its potential contributions to ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. FD7
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. FD7 chromosome, complete genome.

Gene Summary

Adenine Count

643589 bp

Thymine Count

635144 bp

Guanine Count

1202579 bp

Cytosine Count

1214302 bp

Genome Length

3695614 bp

Protein-coding Genes

3481 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent clp endopeptidase proteolytic subunit clppSPYCA_RS16900Not AvailableNegative3485718 - 348636823787.8
ferredoxin fdxaSPYCA_RS16905Not AvailableNegative3486521 - 348685912490.6
rna-binding s4 domain-containing proteinSPYCA_RS16910Not AvailableNegative3486974 - 348732412138.7
helicase-related proteinSPYCA_RS16915Not AvailableNegative3487332 - 349009198652.3
m23 family metallopeptidaseSPYCA_RS16920Not AvailablePositive3490528 - 349207254592.7
porphobilinogen synthaseSPYCA_RS16925Not AvailablePositive3492294 - 349329235516.2
spermidine synthaseSPYCA_RS16930Not AvailablePositive3493297 - 349555580823.2
gamma carbonic anhydrase family proteinSPYCA_RS16935Not AvailablePositive3495552 - 349610919667.8
urate hydroxylase puudSPYCA_RS16940Not AvailableNegative3496197 - 349676920870.2
inner membrane-spanning protein ycibSPYCA_RS16945Not AvailableNegative3496849 - 349752024432.5

Displaying genes 3411 – 3420 of 3822 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.