Hymenobacter lapidarius str. CCM 8643

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter lapidarius str. CCM 8643 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, indicating a simpler chromosomal organization compared to bacteria with multiple replicons. This specific strain is cataloged under the accession number MDZB00000000.1, which allows for its identification and further study within microbial databases. The classification of Hymenobacter lapidarius as Gram-negative suggests that it has a thinner peptidoglycan layer in its cell wall, surrounded by an outer membrane containing lipopolysaccharides. This structural feature can influence its interactions with the environment, including resistance to certain antibiotics and the ability to thrive in various ecological niches. Hymenobacter species are often found in diverse habitats, including soil and aquatic environments, where they play a role in biogeochemical cycles. Their presence in these ecosystems can be indicative of microbial diversity and can contribute to nutrient cycling and organic matter decomposition. Understanding the traits of Hymenobacter lapidarius str. CCM 8643 can provide insights into its ecological roles and potential applications in biotechnology or environmental management. The study of such microorganisms is essential for unraveling the complexities of microbial communities and their functions in various ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter lapidarius
StrainCCM 8643

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter lapidarius strain CCM 8643

Gene Summary

Adenine Count

909633 bp

Thymine Count

907474 bp

Guanine Count

1422404 bp

Cytosine Count

1422568 bp

Genome Length

4662079 bp

Protein-coding Genes

3736 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glucose-1-phosphate thymidylyltransferaseBEN47_06680Not AvailableNegative69015 - 6989332218.8
vi polysaccharide biosynthesis protein vipb/tvicBEN47_06685Not AvailableNegative69995 - 7100236593.5
dtdp-glucose 4,6-dehydrataseBEN47_06690Not AvailableNegative71133 - 7218839529.2
udp-glucose 4-epimerase galeBEN47_06695Not AvailableNegative72300 - 7332536858.8
udp-n-acetyl-d-galactosamine dehydrogenaseBEN47_06700Not AvailableNegative73428 - 7472347836.4
hexapeptide transferaseBEN47_06705Not AvailableNegative74728 - 7535422239.2
hypothetical proteinBEN47_06710Not AvailablePositive75447 - 7603421813.8
2-hydroxymuconic semialdehyde dehydrogenaseBEN47_06715Not AvailableNegative76035 - 7747751642.8
glycosyltransferaseBEN47_06720Not AvailableNegative77530 - 7848035337.1
hypothetical proteinBEN47_06725Not AvailableNegative78515 - 7927327804.4

Displaying genes 61 – 70 of 3784 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.