Hymenobacter lapidarius str. CCM 8643

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter lapidarius str. CCM 8643 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, indicating a simpler chromosomal organization compared to bacteria with multiple replicons. This specific strain is cataloged under the accession number MDZB00000000.1, which allows for its identification and further study within microbial databases. The classification of Hymenobacter lapidarius as Gram-negative suggests that it has a thinner peptidoglycan layer in its cell wall, surrounded by an outer membrane containing lipopolysaccharides. This structural feature can influence its interactions with the environment, including resistance to certain antibiotics and the ability to thrive in various ecological niches. Hymenobacter species are often found in diverse habitats, including soil and aquatic environments, where they play a role in biogeochemical cycles. Their presence in these ecosystems can be indicative of microbial diversity and can contribute to nutrient cycling and organic matter decomposition. Understanding the traits of Hymenobacter lapidarius str. CCM 8643 can provide insights into its ecological roles and potential applications in biotechnology or environmental management. The study of such microorganisms is essential for unraveling the complexities of microbial communities and their functions in various ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter lapidarius
StrainCCM 8643

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter lapidarius strain CCM 8643

Gene Summary

Adenine Count

909633 bp

Thymine Count

907474 bp

Guanine Count

1422404 bp

Cytosine Count

1422568 bp

Genome Length

4662079 bp

Protein-coding Genes

3736 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBEN47_06880Not AvailableNegative118972 - 11982632129.3
hypothetical proteinBEN47_06885Not AvailableNegative120199 - 12153347997.6
transcriptional regulatorBEN47_06890Not AvailableNegative121511 - 12191515259.0
hypothetical proteinBEN47_06900Not AvailablePositive124158 - 12481122938.2
signal peptide proteinBEN47_06905Not AvailablePositive125081 - 12553617007.5
hypothetical proteinBEN47_06915Not AvailableNegative126814 - 12880270575.9
hypothetical proteinBEN47_06920Not AvailablePositive128836 - 12958828078.9
hypothetical proteinBEN47_06925Not AvailablePositive129575 - 13080141997.0
proline iminopeptidaseBEN47_06930Not AvailableNegative130961 - 13204640061.2
peptidase s9BEN47_06935Not AvailableNegative132266 - 13444080166.8

Displaying genes 101 – 110 of 3784 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.