Rodentibacter myodis

Rodmicroaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter myodis is a Gram-negative, non-motile bacterium characterized by its rod-shaped morphology. It is classified as a microaerophile, indicating that it requires lower levels of oxygen for growth compared to atmospheric concentrations. This oxygen requirement suggests that R. myodis may inhabit specific ecological niches where oxygen levels are moderated, potentially influencing its interactions within its environment. The bacterium possesses a single replicon, which is a circular sequence of DNA that serves as the genetic material for its replication. The accession number MLHQ00000000.1 is associated with its genomic data, providing a reference for further studies regarding its genetic characteristics and potential functions. Understanding the traits of Rodentibacter myodis contributes to broader ecological insights, particularly regarding its role within ecosystems inhabited by rodents. Given its microaerophilic nature, R. myodis may play a role in the microbial communities associated with rodent hosts, potentially influencing their health or the decomposition processes within their habitats. The specialized adaptation to microaerobic environments could also suggest a unique ecological niche, where it interacts with other microorganisms or contributes to nutrient cycling in rodent-associated ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter myodis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter myodis strain Ac151 contig_54, whole genome shotgun

Gene Summary

Adenine Count

729520 bp

Thymine Count

726777 bp

Guanine Count

500152 bp

Cytosine Count

509828 bp

Genome Length

2466277 bp

Protein-coding Genes

2140 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphogluconate dehydrogenase (nadp(+)-dependent, decarboxylating)BKL49_06615Not AvailablePositive1358791 - 136024553320.8
bcr/cfla family drug resistance efflux transporterBKL49_06620Not AvailablePositive1360330 - 136152343896.2
hypothetical proteinBKL49_06625Not AvailablePositive1361578 - 136188911976.1
hypothetical proteinBKL49_06630Not AvailablePositive1362016 - 13622196462.08
ribulose-phosphate 3-epimeraseBKL49_06635Not AvailablePositive1362371 - 136304824499.7
phosphoglycolate phosphataseBKL49_06640Not AvailablePositive1363097 - 136377124597.6
endopeptidase laBKL49_06645Not AvailablePositive1363896 - 136631089649.0
yggw family oxidoreductaseBKL49_06650Not AvailablePositive1366362 - 136751344021.6
ribose 5-phosphate isomerase aBKL49_06655Not AvailablePositive1367620 - 136827923141.2
d-3-phosphoglycerate dehydrogenaseBKL49_06660Not AvailablePositive1368309 - 136954144516.7

Displaying genes 1291 – 1300 of 2316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.