Rodentibacter myodis

Rodmicroaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter myodis is a Gram-negative, non-motile bacterium characterized by its rod-shaped morphology. It is classified as a microaerophile, indicating that it requires lower levels of oxygen for growth compared to atmospheric concentrations. This oxygen requirement suggests that R. myodis may inhabit specific ecological niches where oxygen levels are moderated, potentially influencing its interactions within its environment. The bacterium possesses a single replicon, which is a circular sequence of DNA that serves as the genetic material for its replication. The accession number MLHQ00000000.1 is associated with its genomic data, providing a reference for further studies regarding its genetic characteristics and potential functions. Understanding the traits of Rodentibacter myodis contributes to broader ecological insights, particularly regarding its role within ecosystems inhabited by rodents. Given its microaerophilic nature, R. myodis may play a role in the microbial communities associated with rodent hosts, potentially influencing their health or the decomposition processes within their habitats. The specialized adaptation to microaerobic environments could also suggest a unique ecological niche, where it interacts with other microorganisms or contributes to nutrient cycling in rodent-associated ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter myodis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter myodis strain Ac151 contig_54, whole genome shotgun

Gene Summary

Adenine Count

729520 bp

Thymine Count

726777 bp

Guanine Count

500152 bp

Cytosine Count

509828 bp

Genome Length

2466277 bp

Protein-coding Genes

2140 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidaseBKL49_05270Not AvailableNegative1044824 - 104658765529.5
ter macrodomain-binding protein matpBKL49_05275Not AvailablePositive1046715 - 104716117907.6
cold shock domain protein cspdBKL49_05280Not AvailableNegative1047236 - 10474457584.08
hypothetical proteinBKL49_05285Not AvailableNegative1047590 - 10477485901.06
trna pseudouridine(65) synthase trucBKL49_05290Not AvailableNegative1047753 - 104846627578.7
anhydro-n-acetylmuramic acid kinaseBKL49_05295Not AvailableNegative1048463 - 104877712068.6
acylphosphataseBKL49_05300Not AvailableNegative1048844 - 10491139967.89
hypothetical proteinBKL49_05305Not AvailablePositive1049275 - 104994923506.9
tigr01666 family membrane proteinBKL49_05310Not AvailablePositive1050027 - 105216881975.6
hypothetical proteinBKL49_05315Not AvailableNegative1052189 - 10523325228.38

Displaying genes 1031 – 1040 of 2316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.