Microbacterium sp. RU1D

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sp. RU1D is characterized as a rod-shaped bacterium. This morphological trait is significant in understanding its classification and potential functional roles within its ecological niche. The organism possesses a single replicon, which is an indicator of its genomic structure and replication mechanism. The genomic data for Microbacterium sp. RU1D is cataloged under the accession number FTPQ00000000.1, providing a reference point for researchers interested in exploring its genetic makeup and further characterizing its biological properties. As members of the Microbacterium genus are often associated with diverse environments, including soil and water, understanding the traits of Microbacterium sp. RU1D may offer insights into its ecological roles. For example, its rod shape may confer advantages in motility or nutrient uptake in specific habitats. Additionally, the presence of a single replicon suggests a streamlined genetic organization, which could be beneficial for rapid adaptation to environmental changes or stresses. In summary, Microbacterium sp. RU1D exhibits a rod shape and has a single replicon, with its genomic information available under accession FTPQ00000000.1. These traits contribute to our understanding of its ecological interactions and potential applications in biotechnology or environmental science.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. RU1D
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sp. RU1D genome assembly, contig: Ga0136746_17,

Gene Summary

Adenine Count

495996 bp

Thymine Count

496728 bp

Guanine Count

1202281 bp

Cytosine Count

1194123 bp

Genome Length

3389128 bp

Protein-coding Genes

3139 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
simple sugar transport system substrate-binding proteinSAMN05880579_0028Not AvailableNegative32740 - 3372033959.8
nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) familySAMN05880579_0029Not AvailablePositive33969 - 3452919469.9
3-methylfumaryl-coa hydrataseSAMN05880579_0030Not AvailableNegative34667 - 3547328834.3
coa:oxalate coa-transferaseSAMN05880579_0031Not AvailableNegative35470 - 3669943517.8
hydroxymethylglutaryl-coa lyaseSAMN05880579_0032Not AvailableNegative36696 - 3766132942.1
3-hydroxy-3-methylglutaryl-coenzyme a reductaseSAMN05880579_0033Not AvailableNegative37658 - 3893243668.4
pucr c-terminal helix-turn-helix domain-containing proteinSAMN05880579_0034Not AvailableNegative39054 - 4085662170.7
hippurate hydrolaseSAMN05880579_0035Not AvailableNegative40864 - 4205140767.0
peptide/nickel transport system atp-binding proteinSAMN05880579_0036Not AvailableNegative42048 - 4281827063.6
abc-type dipeptide/oligopeptide/nickel transport system, atpase componentSAMN05880579_0037Not AvailableNegative42815 - 4458461820.9

Displaying genes 31 – 40 of 3188 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.