Microbacterium sp. RU1D

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sp. RU1D is characterized as a rod-shaped bacterium. This morphological trait is significant in understanding its classification and potential functional roles within its ecological niche. The organism possesses a single replicon, which is an indicator of its genomic structure and replication mechanism. The genomic data for Microbacterium sp. RU1D is cataloged under the accession number FTPQ00000000.1, providing a reference point for researchers interested in exploring its genetic makeup and further characterizing its biological properties. As members of the Microbacterium genus are often associated with diverse environments, including soil and water, understanding the traits of Microbacterium sp. RU1D may offer insights into its ecological roles. For example, its rod shape may confer advantages in motility or nutrient uptake in specific habitats. Additionally, the presence of a single replicon suggests a streamlined genetic organization, which could be beneficial for rapid adaptation to environmental changes or stresses. In summary, Microbacterium sp. RU1D exhibits a rod shape and has a single replicon, with its genomic information available under accession FTPQ00000000.1. These traits contribute to our understanding of its ecological interactions and potential applications in biotechnology or environmental science.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. RU1D
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sp. RU1D genome assembly, contig: Ga0136746_17,

Gene Summary

Adenine Count

495996 bp

Thymine Count

496728 bp

Guanine Count

1202281 bp

Cytosine Count

1194123 bp

Genome Length

3389128 bp

Protein-coding Genes

3139 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
manganese transport proteinSAMN05880579_0281Not AvailablePositive312956 - 31430546260.6
iron (metal) dependent repressor, dtxr familySAMN05880579_0282Not AvailablePositive314327 - 31495022794.0
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN05880579_0283Not AvailableNegative314972 - 31591933669.3
nagd proteinSAMN05880579_0285Not AvailablePositive316379 - 31720929599.2
uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 familySAMN05880579_0286Not AvailablePositive317212 - 31778420562.3
hypothetical proteinSAMN05880579_0287Not AvailablePositive317924 - 3180735423.42
orotate phosphoribosyltransferaseSAMN05880579_0288Not AvailableNegative318275 - 31896123924.6
exodeoxyribonuclease-3SAMN05880579_0289Not AvailablePositive319043 - 31988831111.4
uncharacterized conserved proteinSAMN05880579_0290Not AvailablePositive320022 - 32044715948.6
predicted rna polymerase sigma factor, contains c-terminal tpr domainSAMN05880579_0291Not AvailablePositive320444 - 32170945072.2

Displaying genes 281 – 290 of 3188 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.