Roseobacter sp.

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Roseobacter

Description

Roseobacter sp. is a Gram-negative, rod-shaped bacterium predominantly found in deep-sea habitats. This genus is part of the Roseobacter clade, which is known for its diverse metabolic capabilities and ecological significance, particularly in marine environments. Roseobacter sp. is characterized by having two replicons, which indicates a unique genomic organization that may contribute to its adaptability in the oligotrophic conditions often found in deep-sea ecosystems. The presence of two replicons can influence gene regulation and replication, potentially providing advantages in nutrient acquisition and survival in challenging environments. The accessions for Roseobacter sp. include PCCY00000000.1 and PAKB00000000.1, which are references for genomic data that can provide insights into its genetic makeup and functional potential. This information can be crucial for understanding the roles that Roseobacter sp. plays in biogeochemical cycles, including carbon and sulfur cycling, which are vital for maintaining the health of marine ecosystems. Overall, the ecological role of Roseobacter sp. in deep-sea habitats underscores its importance in microbial communities. Its metabolic versatility and genomic features may allow it to thrive in nutrient-poor environments, thereby contributing to the overall functioning and stability of marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRoseobacter
SpeciesRoseobacter sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Roseobacter sp.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeep-sea
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Roseobacter sp. isolate SAT8 MHASMcontig_2226886, whole

Gene Summary

Adenine Count

708818 bp

Thymine Count

718792 bp

Guanine Count

1112635 bp

Cytosine Count

1085866 bp

Genome Length

3640882 bp

Protein-coding Genes

3392 genes

Non-Coding Genes

115 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydropyrimidine dehydrogenaseCMN12_16695Not AvailablePositive3427292 - 342861445435.4
nad-dependent dihydropyrimidine dehydrogenase subunit preaCMN12_16700Not AvailablePositive3428635 - 342993947079.3
tetr family transcriptional regulatorCMN12_16705Not AvailableNegative3429955 - 343059023987.7
zn-dependent hydrolaseCMN12_16710Not AvailablePositive3430760 - 343201044575.9
dihydropyrimidinaseCMN12_16715Not AvailablePositive3432104 - 343356453438.3
abc transporter atp-binding proteinCMN12_16720Not AvailablePositive3433671 - 343445328687.5
abc transporter permeaseCMN12_16725Not AvailablePositive3434523 - 343538931061.1
abc transporter permeaseCMN12_16730Not AvailablePositive3435386 - 343622530470.2
abc transporter substrate-binding proteinCMN12_16735Not AvailablePositive3436273 - 343726235613.9
l,d-transpeptidaseCMN12_16740Not AvailableNegative3437365 - 343791620169.4

Displaying genes 3291 – 3300 of 7505 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.