Rodentibacter ratti

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter ratti is a rod-shaped bacterium characterized by a single replicon, which indicates a streamlined genomic structure. The bacterium is cataloged under the accession number MLAI00000000.1, providing a reference point for further genetic and taxonomic studies. This organism is part of a larger ecological community and may play specific roles in its environment, particularly in relation to its rodent hosts. The association between Rodentibacter ratti and rodents suggests potential implications for understanding host-microbe interactions and the ecological dynamics within rodent populations. The simplicity of its genomic structure, represented by a single replicon, could indicate a specialization or adaptation to its ecological niche, allowing it to thrive in the unique conditions associated with its rodent hosts. Overall, the biological and ecological significance of Rodentibacter ratti remains an area for further research, particularly concerning its interactions with hosts and potential impacts on rodent health and microbiomes. Understanding these relationships could contribute to broader insights into rodent ecology and the role of microorganisms in animal health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter ratti
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter ratti strain Ppn158 contig_31, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
urease accessory protein urefBKG88_01745Not AvailablePositive377675 - 37838226539.0
urease accessory protein uregBKG88_01750Not AvailablePositive378574 - 37920923168.0
urease accessory proteinBKG88_01755Not AvailablePositive379333 - 38015430562.0
cytidine deaminaseBKG88_01760Not AvailableNegative380181 - 38105932693.2
dna starvation/stationary phase protection proteinBKG88_01765Not AvailablePositive381353 - 38184118157.4
glutaredoxin, grxb familyBKG88_01770Not AvailableNegative381886 - 38253324677.1
exodeoxyribonuclease v subunit alphaBKG88_01775Not AvailableNegative382535 - 38447573525.1
exodeoxyribonuclease v subunit betaBKG88_01780Not AvailableNegative384475 - 388098139026.0
hypothetical proteinBKG88_01785Not AvailablePositive388234 - 390969103168.0
hypothetical proteinBKG88_01790Not AvailablePositive390953 - 3911507305.0

Displaying genes 461 – 470 of 2002 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.