Rodentibacter ratti

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter ratti is a rod-shaped bacterium characterized by a single replicon, which indicates a streamlined genomic structure. The bacterium is cataloged under the accession number MLAI00000000.1, providing a reference point for further genetic and taxonomic studies. This organism is part of a larger ecological community and may play specific roles in its environment, particularly in relation to its rodent hosts. The association between Rodentibacter ratti and rodents suggests potential implications for understanding host-microbe interactions and the ecological dynamics within rodent populations. The simplicity of its genomic structure, represented by a single replicon, could indicate a specialization or adaptation to its ecological niche, allowing it to thrive in the unique conditions associated with its rodent hosts. Overall, the biological and ecological significance of Rodentibacter ratti remains an area for further research, particularly concerning its interactions with hosts and potential impacts on rodent health and microbiomes. Understanding these relationships could contribute to broader insights into rodent ecology and the role of microorganisms in animal health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter ratti
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter ratti strain Ppn158 contig_31, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal biosynthesis lyase pdxsBKG88_10025Not AvailablePositive2046170 - 204706031872.9
glutamine amidotransferase subunit pdxtBKG88_10030Not AvailablePositive2047062 - 204766121473.1
branched chain amino acid aminotransferaseBKG88_10035Not AvailableNegative2047791 - 204882238146.4
transcriptional regulatorBKG88_10040Not AvailablePositive2049283 - 205017634322.4
23s rrna (cytidine(2498)-2'-o)-methyltransferase rlmmBKG88_10045Not AvailablePositive2050169 - 205125741976.9
Trna-metNot AvailableNot AvailablePositive2051346 - 2051422Not Available
murein transglycosylase aBKG88_10055Not AvailablePositive2051618 - 205274540914.8
trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcdaBKG88_10060Not AvailablePositive2052745 - 205350927849.9
hypothetical proteinBKG88_10065Not AvailableNegative2053678 - 20538667287.78
zinc abc transporter substrate-binding proteinBKG88_10070Not AvailablePositive2053985 - 205494135048.7

Displaying genes 1991 – 2000 of 2002 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.