Rodentibacter ratti

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter ratti is a rod-shaped bacterium characterized by a single replicon, which indicates a streamlined genomic structure. The bacterium is cataloged under the accession number MLAI00000000.1, providing a reference point for further genetic and taxonomic studies. This organism is part of a larger ecological community and may play specific roles in its environment, particularly in relation to its rodent hosts. The association between Rodentibacter ratti and rodents suggests potential implications for understanding host-microbe interactions and the ecological dynamics within rodent populations. The simplicity of its genomic structure, represented by a single replicon, could indicate a specialization or adaptation to its ecological niche, allowing it to thrive in the unique conditions associated with its rodent hosts. Overall, the biological and ecological significance of Rodentibacter ratti remains an area for further research, particularly concerning its interactions with hosts and potential impacts on rodent health and microbiomes. Understanding these relationships could contribute to broader insights into rodent ecology and the role of microorganisms in animal health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter ratti
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter ratti strain Ppn158 contig_31, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i methionyl aminopeptidaseBKG88_09655Not AvailableNegative1962999 - 196380529920.2
iron-sulfur cluster insertion protein erpaBKG88_09660Not AvailablePositive1963931 - 196427512172.3
hypothetical proteinBKG88_09665Not AvailablePositive1964277 - 196463013479.9
penicillin-binding protein 1bBKG88_09670Not AvailablePositive1964637 - 196698287913.8
bifunctional acetaldehyde-coa/alcohol dehydrogenaseBKG88_09675Not AvailablePositive1967506 - 197013095467.8
30s ribosomal protein s15BKG88_09680Not AvailableNegative1970446 - 197071510166.4
bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferaseBKG88_09685Not AvailableNegative1970899 - 197232952061.8
lipid a biosynthesis lauroyl acyltransferaseBKG88_09690Not AvailablePositive1972428 - 197336336051.8
dna topoisomerase iv subunit bBKG88_09695Not AvailablePositive1973439 - 197533770251.1
nitrite reductase, copper-containingBKG88_09700Not AvailablePositive1975360 - 197653242662.4

Displaying genes 1921 – 1930 of 2002 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.