Roseivirga sp. 4D4

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Roseivirgaceae

Genus

Roseivirga

Description

Roseivirga sp. 4D4 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This organism is part of the Roseivirga genus, which is known for its presence in marine environments. The Gram-negative classification indicates that Roseivirga sp. 4D4 possesses a thin peptidoglycan layer surrounded by an outer membrane, a trait typical of this group of bacteria. The availability of its genetic information is highlighted by the accession number MDGP00000000.1, which provides a reference for genomic studies and further research into its biological functions and characteristics. The genomic data can be instrumental in understanding the metabolic pathways and potential ecological roles of Roseivirga sp. 4D4 in its natural habitat. In terms of ecological significance, the presence of Roseivirga sp. 4D4 in marine environments suggests it may play a role in nutrient cycling and interactions within microbial communities. As a member of the diverse marine microbiota, it could contribute to processes such as organic matter degradation or biogeochemical cycling, although specific functions remain to be elucidated. The study of Roseivirga sp. 4D4 and similar marine bacteria is essential for understanding marine ecosystems and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyRoseivirgaceae
GenusRoseivirga
SpeciesRoseivirga sp. 4D4
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Roseivirga sp. 4D4


Gene Summary

Adenine Count

1343169 bp

Thymine Count

1323538 bp

Guanine Count

956639 bp

Cytosine Count

954027 bp

Genome Length

4577373 bp

Protein-coding Genes

3956 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBFP97_00055Not AvailablePositive24862 - 2570432388.2
glycerophosphodiester phosphodiesteraseBFP97_00060O07592Positive25801 - 2663431420.8
hypothetical proteinBFP97_00065Not AvailablePositive26710 - 2788245418.9
sugar kinaseBFP97_00070Q55480Positive27888 - 2888336241.8
peptidase m16BFP97_00075Not AvailablePositive28995 - 3035951451.0
hypothetical proteinBFP97_00080Not AvailablePositive30359 - 3241075191.8
hypothetical proteinBFP97_00085Not AvailablePositive32589 - 3345232468.1
hypothetical proteinBFP97_00090Not AvailableNegative33449 - 3512864835.2
50s ribosomal protein l34BFP97_00095A0M0A2Positive35236 - 353946089.41
ribonuclease p protein componentBFP97_00100Q7MXI4Positive35456 - 3585115466.1

Displaying genes 11 – 20 of 4006 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

173 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da

Displaying 1–10 of 173 metabolites

Health Effects

No health effects information available for this bacterium.