Xanthomonas cannabis pv. cannabis str. NCPPB 2877

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas cannabis pv. cannabis str. NCPPB 2877 is a rod-shaped bacterium with a single replicon. This species is recognized for its significance in the study of plant-pathogenic bacteria. The presence of flagella indicates that this bacterium is motile, which may contribute to its ability to spread within host plants or in the environment. The accession number for this strain is JSZE00000000.1, which provides a unique identifier for genomic studies and comparisons within the Xanthomonas genus. Understanding the genetic makeup and traits of Xanthomonas cannabis pv. cannabis can aid in the development of control measures for diseases it may cause in cannabis plants. In a broader biological context, the motility of Xanthomonas cannabis pv. cannabis str. NCPPB 2877 through flagella could facilitate its colonization of plant surfaces and entry into host tissues, potentially influencing disease dynamics in cannabis cultivation. This highlights the importance of studying such pathogens to better manage plant health and agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas cannabis
Strainpv. cannabis NCPPB 2877

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas cannabis pv. cannabis str. NCPPB 2877
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas cannabis pv. cannabis strain NCPPB 2877 contig_257,

Gene Summary

Adenine Count

817270 bp

Thymine Count

810674 bp

Guanine Count

1557765 bp

Cytosine Count

1571021 bp

Genome Length

4756730 bp

Protein-coding Genes

3910 genes

Non-Coding Genes

83 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carboxylate--amine ligaseOZ10_01035Q981V0Positive241604 - 24283045130.8
siderophore biosynthesis protein, iuca/iucc familyOZ10_01040P55706Positive242827 - 24462065942.1
transporterOZ10_01045Not AvailablePositive244617 - 24578940186.9
iron transporterOZ10_01050A0A0F7RJ52Positive245767 - 24753665186.0
diaminopimelate decarboxylaseOZ10_01055Q2G1M6Positive247533 - 24872942710.7
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseOZ10_01060B2SJ67Negative248926 - 24997235988.4
ligand-gated channel proteinOZ10_01070Q6LLU3Negative250375 - 25225267600.1
o-acetylhomoserine aminocarboxypropyltransferaseOZ10_01075P94890Negative252868 - 25415445666.1
protein disaggregation chaperoneOZ10_01080Q8PHQ4Negative254386 - 25697195501.5
abc transporter permeaseOZ10_01090P75851Negative258059 - 25885328503.6

Displaying genes 221 – 230 of 986 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

79 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000645L-arabinonateC5H9O6Chemical structure of L-arabinonateNot available
Average165.122Da
Monoisotopic165.0404616Da
BASm0000841L-arabinono-1,4-lactoneC5H8O5Chemical structure of L-arabinono-1,4-lactoneNot available
Average148.114Da
Monoisotopic148.037173358Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 79 metabolites

Health Effects

No health effects information available for this bacterium.