Candidatus Planktophila sulfonica

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Candidatus Nanopelagicales

Family

Candidatus Nanopelagicaceae

Genus

Candidatus Planktophila

Description

Candidatus Planktophila sulfonica is a unique bacterium characterized by having a single replicon, which is an important trait for its genetic structure and replication. The genome of this organism is cataloged under the accession number NZ_CP016773.1, indicating its status in genomic databases. This bacterium is noteworthy for its ecological role, particularly in aquatic environments where it is likely involved in biogeochemical cycles. Although specific metabolic pathways or interactions are not detailed, organisms within the genus Candidatus Planktophila are often associated with the degradation of organic materials and the cycling of nutrients in their ecosystems. The presence of a single replicon suggests a streamlined genetic architecture, which may confer advantages in terms of replication efficiency and adaptability in fluctuating environments. This trait could play a crucial role in how Candidatus Planktophila sulfonica responds to ecological pressures, such as changes in nutrient availability or competition with other microorganisms. In summary, Candidatus Planktophila sulfonica, with its single replicon and defined genomic accessions, exemplifies a specialized bacterium that may contribute significantly to its aquatic ecosystem through nutrient cycling and organic matter degradation. Understanding its ecological role could provide insights into the dynamics of microbial communities in freshwater environments.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderCandidatus Nanopelagicales
FamilyCandidatus Nanopelagicaceae
GenusCandidatus Planktophila
SpeciesCandidatus Planktophila sulfonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Planktophila sulfonica isolate MMS-IA-56 chromosome,

Gene Summary

Adenine Count

346724 bp

Thymine Count

344894 bp

Guanine Count

326543 bp

Cytosine Count

326453 bp

Genome Length

1344614 bp

Protein-coding Genes

1345 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidoglycan d,d-transpeptidase ftsi family proteinA1sIA56_RS02700Not AvailablePositive533220 - 53502563915.5
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseA1sIA56_RS02705Not AvailablePositive535022 - 53650352085.9
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseA1sIA56_RS02710Not AvailablePositive536500 - 53789148151.4
phospho-n-acetylmuramoyl-pentapeptide- transferaseA1sIA56_RS02715Not AvailablePositive537888 - 53894637223.4
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseA1sIA56_RS02720Not AvailablePositive538954 - 54034849708.2
putative lipid ii flippase ftswA1sIA56_RS02725Not AvailablePositive540341 - 54150441231.8
udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseA1sIA56_RS02730Not AvailablePositive541501 - 54258338337.1
udp-n-acetylmuramate--l-alanine ligaseA1sIA56_RS02735Not AvailablePositive542583 - 54395648337.5
cell division protein ftsq/divibA1sIA56_RS02740Not AvailablePositive543949 - 54462024091.3
cell division protein ftszA1sIA56_RS02745Not AvailablePositive544764 - 54589138805.6

Displaying genes 541 – 550 of 1388 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.