Pseudomonas sp. PDC86

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PDC86 is characterized by having a single replicon, which is a critical feature that affects its genomic stability and replication processes. This bacterium is cataloged under the accession number FNPO00000000.1, indicating its presence in genomic databases and providing a reference point for its genetic study. The single replicon can be indicative of a streamlined genome, potentially facilitating efficient replication and expression of essential genes. This trait may contribute to Pseudomonas sp. PDC86's adaptability in various environments, as many Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches. Pseudomonas species are often associated with soil and water environments, where they play significant roles in biogeochemical cycles, including nitrogen fixation and biodegradation of organic pollutants. The characteristics of Pseudomonas sp. PDC86, particularly its genomic structure, may allow it to participate effectively in these ecological functions, potentially influencing nutrient cycling and ecosystem health. Understanding the genomic traits of Pseudomonas sp. PDC86 can provide insights into its ecological role and potential applications in bioremediation, where its metabolic capabilities could be harnessed to degrade environmental contaminants. Overall, the single replicon trait is an essential aspect of this bacterium, reflecting its biological efficiency and ecological importance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PDC86
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PDC86
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. PDC86 genome assembly, contig: Ga0115494_186,

Gene Summary

Adenine Count

1376981 bp

Thymine Count

1370120 bp

Guanine Count

2107987 bp

Cytosine Count

2113606 bp

Genome Length

6968694 bp

Protein-coding Genes

6240 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosomal protein s18 acetylase rimiSAMN05444743_12910Not AvailableNegative5325817 - 532627517758.3
ethanolamine ammonia-lyase light chainSAMN05444743_12911Not AvailableNegative5326366 - 532718429792.7
ethanolamine ammonia-lyase heavy chainSAMN05444743_12912Not AvailableNegative5327196 - 532859049894.9
ethanolamine:proton symporter, eat familySAMN05444743_12913Not AvailableNegative5328643 - 533007650404.5
aldehyde dehydrogenaseSAMN05444743_12914Not AvailableNegative5330222 - 533174254992.0
transcriptional regulator of acetoin/glycerol metabolismSAMN05444743_12915Not AvailablePositive5332016 - 533392069587.4
udp-n-acetylmuramate: l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligaseSAMN05444743_12916Not AvailablePositive5333995 - 533534448476.1
4-hydroxy-3-polyprenylbenzoate decarboxylaseSAMN05444743_12917Not AvailablePositive5335341 - 533597022639.6
uncharacterized conserved protein ycekSAMN05444743_12918Not AvailablePositive5335963 - 53362479463.75
uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domainsSAMN05444743_12919Not AvailableNegative5336391 - 533703223411.7

Displaying genes 4881 – 4890 of 6327 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.