Pseudomonas sp. PDC86

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PDC86 is characterized by having a single replicon, which is a critical feature that affects its genomic stability and replication processes. This bacterium is cataloged under the accession number FNPO00000000.1, indicating its presence in genomic databases and providing a reference point for its genetic study. The single replicon can be indicative of a streamlined genome, potentially facilitating efficient replication and expression of essential genes. This trait may contribute to Pseudomonas sp. PDC86's adaptability in various environments, as many Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches. Pseudomonas species are often associated with soil and water environments, where they play significant roles in biogeochemical cycles, including nitrogen fixation and biodegradation of organic pollutants. The characteristics of Pseudomonas sp. PDC86, particularly its genomic structure, may allow it to participate effectively in these ecological functions, potentially influencing nutrient cycling and ecosystem health. Understanding the genomic traits of Pseudomonas sp. PDC86 can provide insights into its ecological role and potential applications in bioremediation, where its metabolic capabilities could be harnessed to degrade environmental contaminants. Overall, the single replicon trait is an essential aspect of this bacterium, reflecting its biological efficiency and ecological importance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PDC86
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PDC86
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. PDC86 genome assembly, contig: Ga0115494_186,

Gene Summary

Adenine Count

1376981 bp

Thymine Count

1370120 bp

Guanine Count

2107987 bp

Cytosine Count

2113606 bp

Genome Length

6968694 bp

Protein-coding Genes

6240 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methyl-accepting chemotaxis proteinSAMN05444743_105145Not AvailableNegative1646449 - 164806257346.6
mfs transporter, dha1 family, bicyclomycin/chloramphenicol resistance proteinSAMN05444743_105146Not AvailablePositive1648263 - 164947442259.5
hypothetical proteinSAMN05444743_105147Not AvailablePositive1649568 - 165042530440.2
site-specific recombinase xerdSAMN05444743_105148Not AvailableNegative1650491 - 165140535097.2
hypothetical proteinSAMN05444743_105149Not AvailableNegative1651513 - 165233130513.0
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseSAMN05444743_105150Not AvailablePositive1652825 - 165386238074.1
udp-4-amino-4-deoxy-l-arabinose formyltransferase / udp-glucuronic acid dehydrogenase (udp-4-keto-hexauronic acid decarboxylating)SAMN05444743_105151Not AvailablePositive1653859 - 165585074141.5
undecaprenyl phosphate-alpha-l-ara4fn deformylaseSAMN05444743_105152Not AvailablePositive1655850 - 165673432533.9
4-amino-4-deoxy-l-arabinose transferaseSAMN05444743_105153Not AvailablePositive1656731 - 165838661878.6
undecaprenyl phosphate-alpha-l-ara4n flippase subunit arneSAMN05444743_105154Not AvailablePositive1658383 - 165873012948.5

Displaying genes 1511 – 1520 of 6327 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.