Pseudomonas sp. PDC86

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PDC86 is characterized by having a single replicon, which is a critical feature that affects its genomic stability and replication processes. This bacterium is cataloged under the accession number FNPO00000000.1, indicating its presence in genomic databases and providing a reference point for its genetic study. The single replicon can be indicative of a streamlined genome, potentially facilitating efficient replication and expression of essential genes. This trait may contribute to Pseudomonas sp. PDC86's adaptability in various environments, as many Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches. Pseudomonas species are often associated with soil and water environments, where they play significant roles in biogeochemical cycles, including nitrogen fixation and biodegradation of organic pollutants. The characteristics of Pseudomonas sp. PDC86, particularly its genomic structure, may allow it to participate effectively in these ecological functions, potentially influencing nutrient cycling and ecosystem health. Understanding the genomic traits of Pseudomonas sp. PDC86 can provide insights into its ecological role and potential applications in bioremediation, where its metabolic capabilities could be harnessed to degrade environmental contaminants. Overall, the single replicon trait is an essential aspect of this bacterium, reflecting its biological efficiency and ecological importance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PDC86
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PDC86
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. PDC86 genome assembly, contig: Ga0115494_186,

Gene Summary

Adenine Count

1376981 bp

Thymine Count

1370120 bp

Guanine Count

2107987 bp

Cytosine Count

2113606 bp

Genome Length

6968694 bp

Protein-coding Genes

6240 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein of unknown functionSAMN05444743_10585Not AvailablePositive1580500 - 15807548846.44
putative abc transport system atp-binding proteinSAMN05444743_10586Not AvailablePositive1580870 - 158158925773.1
hlyd family secretion proteinSAMN05444743_10587Not AvailablePositive1581586 - 158247331920.7
efflux transporter, outer membrane factor (omf) lipoprotein, nodt familySAMN05444743_10588Not AvailablePositive1582473 - 158396053029.0
putative abc transport system permease proteinSAMN05444743_10589Not AvailablePositive1583918 - 158509943045.1
heat shock protein hsp20SAMN05444743_10590Not AvailableNegative1585187 - 158572920488.5
arginine:ornithine antiporter, apa familySAMN05444743_10591Not AvailableNegative1585806 - 158729652229.9
amino acid abc transporter membrane protein, paat family /amino acid abc transporter atp-binding protein, paat familySAMN05444743_10592Not AvailableNegative1587534 - 158904255404.9
amino acid abc transporter substrate-binding protein, paat familySAMN05444743_10593Not AvailableNegative1589158 - 159003931556.9
isopenicillin n synthaseSAMN05444743_10594Not AvailableNegative1590039 - 159109138740.9

Displaying genes 1451 – 1460 of 6327 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.