Pseudomonas sp. PDC86

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PDC86 is characterized by having a single replicon, which is a critical feature that affects its genomic stability and replication processes. This bacterium is cataloged under the accession number FNPO00000000.1, indicating its presence in genomic databases and providing a reference point for its genetic study. The single replicon can be indicative of a streamlined genome, potentially facilitating efficient replication and expression of essential genes. This trait may contribute to Pseudomonas sp. PDC86's adaptability in various environments, as many Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches. Pseudomonas species are often associated with soil and water environments, where they play significant roles in biogeochemical cycles, including nitrogen fixation and biodegradation of organic pollutants. The characteristics of Pseudomonas sp. PDC86, particularly its genomic structure, may allow it to participate effectively in these ecological functions, potentially influencing nutrient cycling and ecosystem health. Understanding the genomic traits of Pseudomonas sp. PDC86 can provide insights into its ecological role and potential applications in bioremediation, where its metabolic capabilities could be harnessed to degrade environmental contaminants. Overall, the single replicon trait is an essential aspect of this bacterium, reflecting its biological efficiency and ecological importance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PDC86
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PDC86
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. PDC86 genome assembly, contig: Ga0115494_186,

Gene Summary

Adenine Count

1376981 bp

Thymine Count

1370120 bp

Guanine Count

2107987 bp

Cytosine Count

2113606 bp

Genome Length

6968694 bp

Protein-coding Genes

6240 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diguanylate cyclase (ggdef) domain-containing proteinSAMN05444743_104276Not AvailableNegative1479965 - 148183969889.8
response regulator c-di-gmp phosphodiesterase, rpfg family, contains rec and hd-gyp domainsSAMN05444743_104277Not AvailablePositive1482093 - 148342149633.0
8-oxo-dgtp pyrophosphatase mutt, nudix familySAMN05444743_104278Not AvailablePositive1483470 - 148388314627.6
transcriptional regulator, lysr familySAMN05444743_104279Not AvailableNegative1483897 - 148481434038.5
pimeloyl-acp methyl ester carboxylesteraseSAMN05444743_104280Not AvailablePositive1484868 - 148601641166.3
predicted dithiol-disulfide isomerase, dsba familySAMN05444743_104281Not AvailablePositive1486072 - 148672524004.2
hypothetical proteinSAMN05444743_1051Not AvailablePositive1487709 - 148870736724.9
uncharacterized conserved protein, alpha-e superfamilySAMN05444743_1052Not AvailableNegative1489016 - 148996635929.6
uncharacterized conserved protein, circularly permuted atpgrasp superfamilySAMN05444743_1053Not AvailableNegative1489969 - 149137852216.8
hypothetical proteinSAMN05444743_1054Not AvailablePositive1492056 - 149260120794.0

Displaying genes 1361 – 1370 of 6327 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.