Pseudomonas sp. PDC86

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PDC86 is characterized by having a single replicon, which is a critical feature that affects its genomic stability and replication processes. This bacterium is cataloged under the accession number FNPO00000000.1, indicating its presence in genomic databases and providing a reference point for its genetic study. The single replicon can be indicative of a streamlined genome, potentially facilitating efficient replication and expression of essential genes. This trait may contribute to Pseudomonas sp. PDC86's adaptability in various environments, as many Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches. Pseudomonas species are often associated with soil and water environments, where they play significant roles in biogeochemical cycles, including nitrogen fixation and biodegradation of organic pollutants. The characteristics of Pseudomonas sp. PDC86, particularly its genomic structure, may allow it to participate effectively in these ecological functions, potentially influencing nutrient cycling and ecosystem health. Understanding the genomic traits of Pseudomonas sp. PDC86 can provide insights into its ecological role and potential applications in bioremediation, where its metabolic capabilities could be harnessed to degrade environmental contaminants. Overall, the single replicon trait is an essential aspect of this bacterium, reflecting its biological efficiency and ecological importance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PDC86
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PDC86
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. PDC86 genome assembly, contig: Ga0115494_186,

Gene Summary

Adenine Count

1376981 bp

Thymine Count

1370120 bp

Guanine Count

2107987 bp

Cytosine Count

2113606 bp

Genome Length

6968694 bp

Protein-coding Genes

6240 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
heptosyltransferase-2SAMN05444743_10181Not AvailableNegative91880 - 9291438176.5
glutamate-ammonia-ligase adenylyltransferaseSAMN05444743_10182Not AvailableNegative92969 - 95908109720.0
pyruvate dehydrogenase e1 componentSAMN05444743_10183Not AvailablePositive96292 - 9893799407.4
pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase)SAMN05444743_10184Not AvailablePositive98949 - 10061356539.3
diguanylate cyclase/phosphodiesterase with pas/pac and gaf sensor(s)SAMN05444743_10185Not AvailablePositive100921 - 103614100450.0
peptide-methionine (s)-s-oxide reductaseSAMN05444743_10186Not AvailablePositive103687 - 10433423447.8
23s rrna (adenine2030-n6)-methyltransferaseSAMN05444743_10187Not AvailableNegative104463 - 10529931763.4
o-acetylhomoserine sulfhydrylaseSAMN05444743_10188Not AvailablePositive105530 - 10680745937.1
protein of unknown functionSAMN05444743_10189Not AvailableNegative106793 - 10754828023.4
type vi secretion system secreted protein vgrgSAMN05444743_10190Not AvailableNegative107503 - 10933567194.6

Displaying genes 111 – 120 of 6327 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.