Loktanella sp. DSM 29012

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Loktanella

Description

Loktanella sp. DSM 29012 is a bacterial strain notable for its single replicon, which is a characteristic feature that can influence its genetic stability and replication efficiency. The strain is cataloged under the accession number FOEJ00000000.1. This singular replicon may suggest a streamlined genetic organization, which could be advantageous for the organism's survival and adaptability in various environments. Given its taxonomy, Loktanella sp. is part of the larger microbial community that thrives in diverse ecological niches, particularly in marine environments. The traits of this strain suggest that it may play a role in biogeochemical cycles, possibly contributing to nutrient cycling in marine ecosystems. The presence of unique metabolic pathways in related species hints at the potential for Loktanella sp. DSM 29012 to engage in specialized interactions within its habitat, although specific metabolic capabilities are not detailed in the available data. Understanding the genetic makeup and ecological role of Loktanella sp. DSM 29012 could provide insights into its function within marine microbiomes. As a part of the microbial community, it may contribute to the overall health and stability of its environment, reflecting the intricate relationships that exist among microorganisms in marine ecosystems. Further research into this strain could illuminate its biological significance and potential applications in biotechnology or environmental science.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusLoktanella
SpeciesLoktanella sp. DSM 29012
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Loktanella sp. DSM 29012 genome assembly, contig: Ga0111581_121,

Gene Summary

Adenine Count

650852 bp

Thymine Count

655904 bp

Guanine Count

1057300 bp

Cytosine Count

1053423 bp

Genome Length

3417479 bp

Protein-coding Genes

3275 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
accessory colonization factor acfcSAMN05428995_11047Not AvailablePositive3268696 - 326951729721.7
sulfite oxidase/sulfite dehydrogenaseSAMN05428995_11048Not AvailablePositive3269635 - 327081641334.8
cytochrome c oxidase, cbb3-type, subunit iiiSAMN05428995_11049Not AvailablePositive3270827 - 327118912502.8
hypothetical proteinSAMN05428995_11050Not AvailableNegative3271202 - 327189424378.8
rna polymerase sigma-70 factor, ecf subfamilySAMN05428995_11051Not AvailableNegative3271891 - 327238819609.7
transposase, is30 familySAMN05428995_11052Not AvailablePositive3272759 - 327376939352.0
winged helix-turn helixSAMN05428995_11053Not AvailablePositive3273880 - 327444921713.1
hypothetical proteinSAMN05428995_11054Not AvailableNegative3274667 - 327533823190.5
uncharacterized conserved protein glcg, duf336 familySAMN05428995_11055Not AvailableNegative3275402 - 327588415787.9
two-component response regulator, fixj family, consists of rec and hth domainsSAMN05428995_11056Not AvailableNegative3275975 - 327658321887.2

Displaying genes 3241 – 3250 of 3375 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.