Chitinophaga sp. YR573

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. YR573 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which indicates a streamlined genetic structure often associated with specific ecological niches. The strain is cataloged under the accession number FOJF00000000.1, providing a basis for its genomic and taxonomic identification. As a member of the Chitinophaga genus, this bacterium is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The ability to metabolize chitin is ecologically significant, as it contributes to nutrient cycling in various environments, particularly in soil and aquatic systems where chitinous materials may accumulate. Understanding the traits of Chitinophaga sp. YR573 furthers our knowledge of microbial diversity and the functional roles these organisms play in their ecosystems. Their capacity to break down complex polysaccharides like chitin can influence soil health, organic matter decomposition, and the overall dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. YR573
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. YR573 genome assembly, contig: Ga0115458_18,

Gene Summary

Adenine Count

2341778 bp

Thymine Count

2306990 bp

Guanine Count

1725057 bp

Cytosine Count

1692305 bp

Genome Length

8066695 bp

Protein-coding Genes

6441 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein tolcSAMN05428988_6434Not AvailablePositive7832592 - 783399251988.3
multidrug efflux pump subunit acrbSAMN05428988_6435Not AvailablePositive7833996 - 7837193116100.0
rnd family efflux transporter, mfp subunitSAMN05428988_6436Not AvailablePositive7837186 - 783824138532.2
3',5'-cyclic amp phosphodiesterase cpdaSAMN05428988_6437Not AvailableNegative7838338 - 783927335404.6
pap2 superfamily proteinSAMN05428988_6438Not AvailableNegative7839353 - 784019230853.4
h+/cl-antiporter clcaSAMN05428988_6440Not AvailablePositive7840424 - 784168045419.6
nadph:quinone reductaseSAMN05428988_6441Not AvailablePositive7841711 - 784265833318.6
predicted oxidoreductaseSAMN05428988_6442Not AvailableNegative7842702 - 784366435511.9
trehalose 6-phosphate synthase /trehalose 6-phosphataseSAMN05428988_6443Not AvailablePositive7843891 - 784606283335.4
glucoamylase (glucan-1,4-alpha-glucosidase), gh15 familySAMN05428988_6444Not AvailableNegative7846135 - 784792869198.2

Displaying genes 6371 – 6380 of 6541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.